BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m26
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
cin-miR-4006c-3p MIMAT0016475 Ciona intestinalis miR-4006c-3p 16 6.9
mdv2-miR-M26-5p MIMAT0004471 Mareks disease miR-M26-5p 16 6.9
gma-miR9723 MIMAT0036338 Glycine max miR9723 14 27
ppc-miR-8213-3p MIMAT0032853 Pristionchus pacificus miR-8213-3p 14 27
prd-miR-7945-3p MIMAT0030751 Panagrellus redivivus miR-7945-3p 14 27
prd-miR-7881-3p MIMAT0030521 Panagrellus redivivus miR-7881-3p 14 27
mdo-miR-7297-3p MIMAT0028579 Monodelphis domestica miR-7297-3p 14 27
mmu-miR-6994-5p MIMAT0027890 Mus musculus miR-6994-5p 14 27
ppe-miR6289 MIMAT0027322 Prunus persica miR6289 14 27
pti-miR5478 MIMAT0022111 Phaeodactylum tricornutum miR5478 14 27
sja-miR-3490 MIMAT0016299 Schistosoma japonicum miR-3490 14 27
hsa-miR-3121-5p MIMAT0019199 Homo sapiens miR-3121-5p 14 27
gga-miR-1693 MIMAT0007585 Gallus gallus miR-1693 14 27
>cin-miR-4006c-3p MIMAT0016475 Ciona intestinalis miR-4006c-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcctttgt 8
||||||||
Sbjct: 1 tcctttgt 8
>mdv2-miR-M26-5p MIMAT0004471 Mareks disease miR-M26-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcctttgt 8
||||||||
Sbjct: 1 tcctttgt 8
>gma-miR9723 MIMAT0036338 Glycine max miR9723
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctttg 7
|||||||
Sbjct: 7 tcctttg 1
>ppc-miR-8213-3p MIMAT0032853 Pristionchus pacificus miR-8213-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctttg 7
|||||||
Sbjct: 2 tcctttg 8
>prd-miR-7945-3p MIMAT0030751 Panagrellus redivivus miR-7945-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctttg 7
|||||||
Sbjct: 8 tcctttg 2
>prd-miR-7881-3p MIMAT0030521 Panagrellus redivivus miR-7881-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctttg 7
|||||||
Sbjct: 8 tcctttg 2
>mdo-miR-7297-3p MIMAT0028579 Monodelphis domestica miR-7297-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctttg 7
|||||||
Sbjct: 7 tcctttg 1
>mmu-miR-6994-5p MIMAT0027890 Mus musculus miR-6994-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctttgt 8
|||||||
Sbjct: 7 cctttgt 1
>ppe-miR6289 MIMAT0027322 Prunus persica miR6289
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctttg 7
|||||||
Sbjct: 1 tcctttg 7
>pti-miR5478 MIMAT0022111 Phaeodactylum tricornutum miR5478
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cctttgt 8
|||||||
Sbjct: 8 cctttgt 2
>sja-miR-3490 MIMAT0016299 Schistosoma japonicum miR-3490
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctttg 7
|||||||
Sbjct: 1 tcctttg 7
>hsa-miR-3121-5p MIMAT0019199 Homo sapiens miR-3121-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcctttg 7
|||||||
Sbjct: 1 tcctttg 7
>gga-miR-1693 MIMAT0007585 Gallus gallus miR-1693
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcctttg 7
|||||||
Sbjct: 8 tcctttg 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 202
Number of extensions: 187
Number of successful extensions: 173
Number of sequences better than 100.0: 13
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
