BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= blv-miR-b5-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
blv-miR-B5-3p MIMAT0025866 Bovine leukemia miR-B5-3p 14 20
oan-miR-1363-3p MIMAT0007026 Ornithorhynchus anatinus miR-1363-3p 14 20
ssc-miR-9819-5p MIMAT0037037 Sus scrofa miR-9819-5p 12 80
eca-miR-9183 MIMAT0034764 Equus caballus miR-9183 12 80
cel-miR-8211-3p MIMAT0032843 Caenorhabditis elegans miR-8211-3p 12 80
bbe-miR-4867-3p MIMAT0031691 Branchiostoma belcheri miR-4867-3p 12 80
ppe-miR171d-3p MIMAT0031467 Prunus persica miR171d-3p 12 80
mdo-miR-7328-5p MIMAT0028658 Monodelphis domestica miR-7328-5p 12 80
gga-miR-6596-5p MIMAT0025690 Gallus gallus miR-6596-5p 12 80
hsv1-miR-H26 MIMAT0025022 Herpes Simplex miR-H26 12 80
mml-miR-2114 MIMAT0024345 Macaca mulatta miR-2114 12 80
ptr-miR-2114 MIMAT0024072 Pan troglodytes miR-2114 12 80
cgr-miR-615-3p MIMAT0023988 Cricetulus griseus miR-615-3p 12 80
gma-miR171s MIMAT0023234 Glycine max miR171s 12 80
gma-miR171r MIMAT0023229 Glycine max miR171r 12 80
mtr-miR171g MIMAT0023132 Medicago truncatula miR171g 12 80
mtr-miR171h MIMAT0021269 Medicago truncatula miR171h 12 80
ssc-miR-615 MIMAT0020595 Sus scrofa miR-615 12 80
dme-miR-4941-5p MIMAT0020148 Drosophila melanogaster miR-4941-5p 12 80
bfl-miR-4867 MIMAT0020103 Branchiostoma floridae miR-4867 12 80
csi-miR171b MIMAT0018455 Citrus sinensis miR171b 12 80
ppy-miR-615-3p MIMAT0016057 Pongo pygmaeus miR-615-3p 12 80
ath-miR841b-5p MIMAT0017741 Arabidopsis thaliana miR841b-5p 12 80
aly-miR858-3p MIMAT0017646 Arabidopsis lyrata miR858-3p 12 80
eca-miR-615-3p MIMAT0012977 Equus caballus miR-615-3p 12 80
cte-miR-2714 MIMAT0013583 Capitella teleta miR-2714 12 80
dps-miR-2518 MIMAT0012301 Drosophila pseudoobscura miR-2518 12 80
bta-miR-2388-3p MIMAT0011941 Bos taurus miR-2388-3p 12 80
bta-miR-2373-3p MIMAT0011919 Bos taurus miR-2373-3p 12 80
hsa-miR-2114-3p MIMAT0011157 Homo sapiens miR-2114-3p 12 80
ptr-miR-615 MIMAT0008277 Pan troglodytes miR-615 12 80
mml-miR-615-3p MIMAT0006466 Macaca mulatta miR-615-3p 12 80
gga-miR-1581 MIMAT0007442 Gallus gallus miR-1581 12 80
gma-miR171b-3p MIMAT0007363 Glycine max miR171b-3p 12 80
ptc-miR171j MIMAT0005996 Populus trichocarpa miR171j 12 80
ptc-miR171m MIMAT0005995 Populus trichocarpa miR171m 12 80
ptc-miR171l-3p MIMAT0005994 Populus trichocarpa miR171l-3p 12 80
oan-miR-1417-5p MIMAT0007274 Ornithorhynchus anatinus miR-1417-5p 12 80
ath-miR841a-5p MIMAT0004263 Arabidopsis thaliana miR841a-5p 12 80
mmu-miR-615-3p MIMAT0003783 Mus musculus miR-615-3p 12 80
hsa-miR-615-3p MIMAT0003283 Homo sapiens miR-615-3p 12 80
mmu-miR-434-5p MIMAT0001421 Mus musculus miR-434-5p 12 80
>blv-miR-B5-3p MIMAT0025866 Bovine leukemia miR-B5-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagcc 7
|||||||
Sbjct: 2 tcgagcc 8
>oan-miR-1363-3p MIMAT0007026 Ornithorhynchus anatinus
miR-1363-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagcc 7
|||||||
Sbjct: 2 tcgagcc 8
>ssc-miR-9819-5p MIMAT0037037 Sus scrofa miR-9819-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgagc 6
||||||
Sbjct: 8 tcgagc 3
>eca-miR-9183 MIMAT0034764 Equus caballus miR-9183
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgagcc 7
||||||
Sbjct: 8 cgagcc 3
>cel-miR-8211-3p MIMAT0032843 Caenorhabditis elegans miR-8211-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgagcc 7
||||||
Sbjct: 8 cgagcc 3
>bbe-miR-4867-3p MIMAT0031691 Branchiostoma belcheri miR-4867-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>ppe-miR171d-3p MIMAT0031467 Prunus persica miR171d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>mdo-miR-7328-5p MIMAT0028658 Monodelphis domestica miR-7328-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgagcc 7
||||||
Sbjct: 8 cgagcc 3
>gga-miR-6596-5p MIMAT0025690 Gallus gallus miR-6596-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>hsv1-miR-H26 MIMAT0025022 Herpes Simplex miR-H26
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgagcc 7
||||||
Sbjct: 7 cgagcc 2
>mml-miR-2114 MIMAT0024345 Macaca mulatta miR-2114
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>ptr-miR-2114 MIMAT0024072 Pan troglodytes miR-2114
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>cgr-miR-615-3p MIMAT0023988 Cricetulus griseus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>gma-miR171s MIMAT0023234 Glycine max miR171s
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>gma-miR171r MIMAT0023229 Glycine max miR171r
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>mtr-miR171g MIMAT0023132 Medicago truncatula miR171g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>mtr-miR171h MIMAT0021269 Medicago truncatula miR171h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>ssc-miR-615 MIMAT0020595 Sus scrofa miR-615
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>dme-miR-4941-5p MIMAT0020148 Drosophila melanogaster
miR-4941-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgagc 6
||||||
Sbjct: 3 tcgagc 8
>bfl-miR-4867 MIMAT0020103 Branchiostoma floridae miR-4867
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>csi-miR171b MIMAT0018455 Citrus sinensis miR171b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>ppy-miR-615-3p MIMAT0016057 Pongo pygmaeus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>ath-miR841b-5p MIMAT0017741 Arabidopsis thaliana miR841b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>aly-miR858-3p MIMAT0017646 Arabidopsis lyrata miR858-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgagc 6
||||||
Sbjct: 3 tcgagc 8
>eca-miR-615-3p MIMAT0012977 Equus caballus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>cte-miR-2714 MIMAT0013583 Capitella teleta miR-2714
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>dps-miR-2518 MIMAT0012301 Drosophila pseudoobscura miR-2518
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgagc 6
||||||
Sbjct: 1 tcgagc 6
>bta-miR-2388-3p MIMAT0011941 Bos taurus miR-2388-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgagc 6
||||||
Sbjct: 6 tcgagc 1
>bta-miR-2373-3p MIMAT0011919 Bos taurus miR-2373-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>hsa-miR-2114-3p MIMAT0011157 Homo sapiens miR-2114-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>ptr-miR-615 MIMAT0008277 Pan troglodytes miR-615
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>mml-miR-615-3p MIMAT0006466 Macaca mulatta miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>gga-miR-1581 MIMAT0007442 Gallus gallus miR-1581
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>gma-miR171b-3p MIMAT0007363 Glycine max miR171b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>ptc-miR171j MIMAT0005996 Populus trichocarpa miR171j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>ptc-miR171m MIMAT0005995 Populus trichocarpa miR171m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>ptc-miR171l-3p MIMAT0005994 Populus trichocarpa miR171l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 1 cgagcc 6
>oan-miR-1417-5p MIMAT0007274 Ornithorhynchus anatinus
miR-1417-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgagc 6
||||||
Sbjct: 6 tcgagc 1
>ath-miR841a-5p MIMAT0004263 Arabidopsis thaliana miR841a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>mmu-miR-615-3p MIMAT0003783 Mus musculus miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>hsa-miR-615-3p MIMAT0003283 Homo sapiens miR-615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgagcc 7
||||||
Sbjct: 3 cgagcc 8
>mmu-miR-434-5p MIMAT0001421 Mus musculus miR-434-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgagc 6
||||||
Sbjct: 6 tcgagc 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 57
Number of extensions: 55
Number of successful extensions: 42
Number of sequences better than 100.0: 42
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 42
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
