BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-2-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8274-5p MIMAT0033047 Pristionchus pacificus miR-8274-5p 16 6.9
mtr-miR5224a MIMAT0021182 Medicago truncatula miR5224a 16 6.9
hsa-miR-3131 MIMAT0014996 Homo sapiens miR-3131 16 6.9
chi-miR-151-5p MIMAT0035981 Capra hircus miR-151-5p 14 27
aly-miR2111c-3p MIMAT0031385 Arabidopsis lyrata miR2111c-3p 14 27
prv-miR-LLT9 MIMAT0025312 Pseudorabies virus miR-LLT9 14 27
ggo-miR-151a MIMAT0024107 Gorilla gorilla miR-151a 14 27
cgr-miR-151-5p MIMAT0023782 Cricetulus griseus miR-151-5p 14 27
osa-miR5793 MIMAT0023260 Oryza sativa miR5793 14 27
bra-miR2111a-3p MIMAT0016369 Brassica rapa miR2111a-3p 14 27
sja-miR-3487 MIMAT0016296 Schistosoma japonicum miR-3487 14 27
ppy-miR-611 MIMAT0016052 Pongo pygmaeus miR-611 14 27
ppy-miR-151a-5p MIMAT0015775 Pongo pygmaeus miR-151a-5p 14 27
aly-miR2111a-3p MIMAT0017658 Arabidopsis lyrata miR2111a-3p 14 27
ssc-miR-151-5p MIMAT0013882 Sus scrofa miR-151-5p 14 27
eca-miR-151-5p MIMAT0013004 Equus caballus miR-151-5p 14 27
mtr-miR2111m-3p MIMAT0026928 Medicago truncatula miR2111m-3p 14 27
bna-miR2111a-3p MIMAT0011783 Brassica napus miR2111a-3p 14 27
ath-miR2111a-3p MIMAT0011151 Arabidopsis thaliana miR2111a-3p 14 27
cfa-miR-151 MIMAT0006615 Canis familiaris miR-151 14 27
mml-miR-611 MIMAT0006463 Macaca mulatta miR-611 14 27
mml-miR-151-5p MIMAT0006212 Macaca mulatta miR-151-5p 14 27
bta-miR-151-5p MIMAT0003523 Bos taurus miR-151-5p 14 27
hsa-miR-151b MIMAT0010214 Homo sapiens miR-151b 14 27
hsa-miR-611 MIMAT0003279 Homo sapiens miR-611 14 27
mghv-miR-M1-4-5p MIMAT0001567 Mouse gammaherpesvirus miR-M1-4-5p 14 27
hsa-miR-151a-5p MIMAT0004697 Homo sapiens miR-151a-5p 14 27
rno-miR-151-5p MIMAT0000613 Rattus norvegicus miR-151-5p 14 27
mmu-miR-151-5p MIMAT0004536 Mus musculus miR-151-5p 14 27
>ppc-miR-8274-5p MIMAT0033047 Pristionchus pacificus miR-8274-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggac 8
||||||||
Sbjct: 1 tcgaggac 8
>mtr-miR5224a MIMAT0021182 Medicago truncatula miR5224a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggac 8
||||||||
Sbjct: 1 tcgaggac 8
>hsa-miR-3131 MIMAT0014996 Homo sapiens miR-3131
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgaggac 8
||||||||
Sbjct: 1 tcgaggac 8
>chi-miR-151-5p MIMAT0035981 Capra hircus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>aly-miR2111c-3p MIMAT0031385 Arabidopsis lyrata miR2111c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgaggac 8
|||||||
Sbjct: 7 cgaggac 1
>prv-miR-LLT9 MIMAT0025312 Pseudorabies virus miR-LLT9
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 2 tcgagga 8
>ggo-miR-151a MIMAT0024107 Gorilla gorilla miR-151a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>cgr-miR-151-5p MIMAT0023782 Cricetulus griseus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>osa-miR5793 MIMAT0023260 Oryza sativa miR5793
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgaggac 8
|||||||
Sbjct: 1 cgaggac 7
>bra-miR2111a-3p MIMAT0016369 Brassica rapa miR2111a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgaggac 8
|||||||
Sbjct: 7 cgaggac 1
>sja-miR-3487 MIMAT0016296 Schistosoma japonicum miR-3487
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgagga 7
|||||||
Sbjct: 7 tcgagga 1
>ppy-miR-611 MIMAT0016052 Pongo pygmaeus miR-611
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgaggac 8
|||||||
Sbjct: 2 cgaggac 8
>ppy-miR-151a-5p MIMAT0015775 Pongo pygmaeus miR-151a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>aly-miR2111a-3p MIMAT0017658 Arabidopsis lyrata miR2111a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgaggac 8
|||||||
Sbjct: 7 cgaggac 1
>ssc-miR-151-5p MIMAT0013882 Sus scrofa miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>eca-miR-151-5p MIMAT0013004 Equus caballus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>mtr-miR2111m-3p MIMAT0026928 Medicago truncatula miR2111m-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgaggac 8
|||||||
Sbjct: 7 cgaggac 1
>bna-miR2111a-3p MIMAT0011783 Brassica napus miR2111a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgaggac 8
|||||||
Sbjct: 7 cgaggac 1
>ath-miR2111a-3p MIMAT0011151 Arabidopsis thaliana miR2111a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgaggac 8
|||||||
Sbjct: 7 cgaggac 1
>cfa-miR-151 MIMAT0006615 Canis familiaris miR-151
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>mml-miR-611 MIMAT0006463 Macaca mulatta miR-611
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgaggac 8
|||||||
Sbjct: 2 cgaggac 8
>mml-miR-151-5p MIMAT0006212 Macaca mulatta miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>bta-miR-151-5p MIMAT0003523 Bos taurus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>hsa-miR-151b MIMAT0010214 Homo sapiens miR-151b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>hsa-miR-611 MIMAT0003279 Homo sapiens miR-611
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgaggac 8
|||||||
Sbjct: 2 cgaggac 8
>mghv-miR-M1-4-5p MIMAT0001567 Mouse gammaherpesvirus
miR-M1-4-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>hsa-miR-151a-5p MIMAT0004697 Homo sapiens miR-151a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>rno-miR-151-5p MIMAT0000613 Rattus norvegicus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
>mmu-miR-151-5p MIMAT0004536 Mus musculus miR-151-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgagga 7
|||||||
Sbjct: 1 tcgagga 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 143
Number of extensions: 111
Number of successful extensions: 92
Number of sequences better than 100.0: 29
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 29
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
