BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s29
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bdi-miR160a-3p MIMAT0027044 Brachypodium distachyon miR160a-3p 14 20
tca-miR-3841-5p MIMAT0018726 Tribolium castaneum miR-3841-5p 14 20
cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p 14 20
hsv1-miR-H2-5p MIMAT0008398 Herpes Simplex miR-H2-5p 14 20
zma-miR160f-3p MIMAT0015209 Zea mays miR160f-3p 14 20
osa-miR160e-3p MIMAT0022867 Oryza sativa miR160e-3p 14 20
osa-miR160d-3p MIMAT0022854 Oryza sativa miR160d-3p 14 20
ata-miR164a-3p MIMAT0037213 Aegilops tauschii miR164a-3p 12 80
prd-miR-7903-3p MIMAT0030619 Panagrellus redivivus miR-7903-3p 12 80
mmu-miR-6907-3p MIMAT0027715 Mus musculus miR-6907-3p 12 80
osa-miR5540 MIMAT0022176 Oryza sativa miR5540 12 80
mtr-miR5283 MIMAT0021327 Medicago truncatula miR5283 12 80
pma-miR-4606 MIMAT0019640 Petromyzon marinus miR-4606 12 80
pma-miR-4562 MIMAT0019594 Petromyzon marinus miR-4562 12 80
tca-miR-3866-5p MIMAT0018824 Tribolium castaneum miR-3866-5p 12 80
tca-miR-3825-3p MIMAT0018679 Tribolium castaneum miR-3825-3p 12 80
ame-miR-3734 MIMAT0018603 Apis mellifera miR-3734 12 80
hsv1-miR-H14-5p MIMAT0014691 Herpes Simplex miR-H14-5p 12 80
tgu-miR-1451-5p MIMAT0014451 Taeniopygia guttata miR-1451-5p 12 80
zma-miR164f-3p MIMAT0015318 Zea mays miR164f-3p 12 80
dme-miR-2499-5p MIMAT0012212 Drosophila melanogaster miR-2499-5p 12 80
gga-miR-1451-5p MIMAT0007324 Gallus gallus miR-1451-5p 12 80
rrv-miR-rR1-7-3p MIMAT0004416 Rhesus monkey miR-rR1-7-3p 12 80
mmu-miR-466h-3p MIMAT0017274 Mus musculus miR-466h-3p 12 80
rlcv-miR-rL1-14-3p MIMAT0003445 Rhesus lymphocryptovirus miR-rL1... 12 80
rlcv-miR-rL1-3 MIMAT0003429 Rhesus lymphocryptovirus miR-rL1-3 12 80
>bdi-miR160a-3p MIMAT0027044 Brachypodium distachyon miR160a-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgcacg 7
|||||||
Sbjct: 8 tcgcacg 2
>tca-miR-3841-5p MIMAT0018726 Tribolium castaneum miR-3841-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgcacg 7
|||||||
Sbjct: 7 tcgcacg 1
>cin-miR-4085-5p MIMAT0016659 Ciona intestinalis miR-4085-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgcacg 7
|||||||
Sbjct: 1 tcgcacg 7
>hsv1-miR-H2-5p MIMAT0008398 Herpes Simplex miR-H2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgcacg 7
|||||||
Sbjct: 1 tcgcacg 7
>zma-miR160f-3p MIMAT0015209 Zea mays miR160f-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgcacg 7
|||||||
Sbjct: 8 tcgcacg 2
>osa-miR160e-3p MIMAT0022867 Oryza sativa miR160e-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgcacg 7
|||||||
Sbjct: 8 tcgcacg 2
>osa-miR160d-3p MIMAT0022854 Oryza sativa miR160d-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgcacg 7
|||||||
Sbjct: 8 tcgcacg 2
>ata-miR164a-3p MIMAT0037213 Aegilops tauschii miR164a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcacg 7
||||||
Sbjct: 8 cgcacg 3
>prd-miR-7903-3p MIMAT0030619 Panagrellus redivivus miR-7903-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcac 6
||||||
Sbjct: 3 tcgcac 8
>mmu-miR-6907-3p MIMAT0027715 Mus musculus miR-6907-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcacg 7
||||||
Sbjct: 8 cgcacg 3
>osa-miR5540 MIMAT0022176 Oryza sativa miR5540
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgcac 6
||||||
Sbjct: 8 tcgcac 3
>mtr-miR5283 MIMAT0021327 Medicago truncatula miR5283
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcacg 7
||||||
Sbjct: 6 cgcacg 1
>pma-miR-4606 MIMAT0019640 Petromyzon marinus miR-4606
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcacg 7
||||||
Sbjct: 8 cgcacg 3
>pma-miR-4562 MIMAT0019594 Petromyzon marinus miR-4562
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcacg 7
||||||
Sbjct: 6 cgcacg 1
>tca-miR-3866-5p MIMAT0018824 Tribolium castaneum miR-3866-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcac 6
||||||
Sbjct: 1 tcgcac 6
>tca-miR-3825-3p MIMAT0018679 Tribolium castaneum miR-3825-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcacg 7
||||||
Sbjct: 8 cgcacg 3
>ame-miR-3734 MIMAT0018603 Apis mellifera miR-3734
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcac 6
||||||
Sbjct: 3 tcgcac 8
>hsv1-miR-H14-5p MIMAT0014691 Herpes Simplex miR-H14-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcac 6
||||||
Sbjct: 3 tcgcac 8
>tgu-miR-1451-5p MIMAT0014451 Taeniopygia guttata miR-1451-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcac 6
||||||
Sbjct: 1 tcgcac 6
>zma-miR164f-3p MIMAT0015318 Zea mays miR164f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcacg 7
||||||
Sbjct: 8 cgcacg 3
>dme-miR-2499-5p MIMAT0012212 Drosophila melanogaster
miR-2499-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcacg 7
||||||
Sbjct: 6 cgcacg 1
>gga-miR-1451-5p MIMAT0007324 Gallus gallus miR-1451-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcac 6
||||||
Sbjct: 1 tcgcac 6
>rrv-miR-rR1-7-3p MIMAT0004416 Rhesus monkey miR-rR1-7-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcacg 7
||||||
Sbjct: 1 cgcacg 6
>mmu-miR-466h-3p MIMAT0017274 Mus musculus miR-466h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcacg 7
||||||
Sbjct: 3 cgcacg 8
>rlcv-miR-rL1-14-3p MIMAT0003445 Rhesus lymphocryptovirus
miR-rL1-14-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcac 6
||||||
Sbjct: 1 tcgcac 6
>rlcv-miR-rL1-3 MIMAT0003429 Rhesus lymphocryptovirus miR-rL1-3
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcac 6
||||||
Sbjct: 1 tcgcac 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 38
Number of extensions: 31
Number of successful extensions: 26
Number of sequences better than 100.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
