BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-us22-3p6
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prd-miR-7950b-3p MIMAT0030817 Panagrellus redivivus miR-7950b-3p 16 6.9
prd-miR-7950a-3p MIMAT0030771 Panagrellus redivivus miR-7950a-3p 16 6.9
prd-miR-7950c-3p MIMAT0030713 Panagrellus redivivus miR-7950c-3p 16 6.9
hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p 16 6.9
cel-miR-4935 MIMAT0020141 Caenorhabditis elegans miR-4935 16 6.9
bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13 14 27
ppc-miR-8360-5p MIMAT0033282 Pristionchus pacificus miR-8360-5p 14 27
osa-miR531c MIMAT0031379 Oryza sativa miR531c 14 27
bmo-miR-2808d MIMAT0015386 Bombyx mori miR-2808d 14 27
bhv1-miR-B2 MIMAT0013963 Bovine herpesvirus miR-B2 14 27
bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748 14 27
mmu-miR-2137 MIMAT0011213 Mus musculus miR-2137 14 27
osa-miR531b MIMAT0007763 Oryza sativa miR531b 14 27
mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p 14 27
osa-miR531a MIMAT0002887 Oryza sativa miR531a 14 27
dre-miR-181c-3p MIMAT0031980 Danio rerio miR-181c-3p 14 27
cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271 14 27
>prd-miR-7950b-3p MIMAT0030817 Panagrellus redivivus
miR-7950b-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcgccggc 8
||||||||
Sbjct: 8 tcgccggc 1
>prd-miR-7950a-3p MIMAT0030771 Panagrellus redivivus
miR-7950a-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcgccggc 8
||||||||
Sbjct: 8 tcgccggc 1
>prd-miR-7950c-3p MIMAT0030713 Panagrellus redivivus
miR-7950c-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcgccggc 8
||||||||
Sbjct: 8 tcgccggc 1
>hcmv-miR-US22-3p MIMAT0028166 Human cytomegalovirus miR-US22-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgccggc 8
||||||||
Sbjct: 1 tcgccggc 8
>cel-miR-4935 MIMAT0020141 Caenorhabditis elegans miR-4935
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcgccggc 8
||||||||
Sbjct: 8 tcgccggc 1
>bhv5-miR-B13 MIMAT0035710 Bovine herpesvirus miR-B13
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgccgg 7
|||||||
Sbjct: 8 tcgccgg 2
>ppc-miR-8360-5p MIMAT0033282 Pristionchus pacificus miR-8360-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgccgg 7
|||||||
Sbjct: 7 tcgccgg 1
>osa-miR531c MIMAT0031379 Oryza sativa miR531c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgccgg 7
|||||||
Sbjct: 2 tcgccgg 8
>bmo-miR-2808d MIMAT0015386 Bombyx mori miR-2808d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgccgg 7
|||||||
Sbjct: 7 tcgccgg 1
>bhv1-miR-B2 MIMAT0013963 Bovine herpesvirus miR-B2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgccggc 8
|||||||
Sbjct: 7 cgccggc 1
>bmo-miR-2748 MIMAT0012627 Bombyx mori miR-2748
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgccgg 7
|||||||
Sbjct: 8 tcgccgg 2
>mmu-miR-2137 MIMAT0011213 Mus musculus miR-2137
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgccggc 8
|||||||
Sbjct: 7 cgccggc 1
>osa-miR531b MIMAT0007763 Oryza sativa miR531b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgccgg 7
|||||||
Sbjct: 2 tcgccgg 8
>mdo-miR-1549-5p MIMAT0026773 Monodelphis domestica miR-1549-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgccgg 7
|||||||
Sbjct: 1 tcgccgg 7
>osa-miR531a MIMAT0002887 Oryza sativa miR531a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgccgg 7
|||||||
Sbjct: 2 tcgccgg 8
>dre-miR-181c-3p MIMAT0031980 Danio rerio miR-181c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgccgg 7
|||||||
Sbjct: 2 tcgccgg 8
>cel-miR-271 MIMAT0000327 Caenorhabditis elegans miR-271
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgccgg 7
|||||||
Sbjct: 1 tcgccgg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 81
Number of extensions: 59
Number of successful extensions: 48
Number of sequences better than 100.0: 17
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
