BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rcmv-miR-r111.2-6
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppc-miR-8340-5p MIMAT0033225 Pristionchus pacificus miR-8340-5p 14 20
mdo-miR-7311-3p MIMAT0028621 Monodelphis domestica miR-7311-3p 14 20
ame-miR-3784 MIMAT0018563 Apis mellifera miR-3784 14 20
sma-miR-8470-5p MIMAT0033659 Schistosoma mansoni miR-8470-5p 12 80
prd-miR-7942-5p MIMAT0030744 Panagrellus redivivus miR-7942-5p 12 80
bta-miR-6530 MIMAT0025566 Bos taurus miR-6530 12 80
hvsa-miR-HSUR5-5p MIMAT0022682 Herpesvirus saimiri miR-HSUR5-5p 12 80
dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster miR-4955-5p 12 80
pma-miR-4580 MIMAT0019613 Petromyzon marinus miR-4580 12 80
pma-miR-4556 MIMAT0019588 Petromyzon marinus miR-4556 12 80
ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746 12 80
ppy-miR-937 MIMAT0016137 Pongo pygmaeus miR-937 12 80
esi-miR3451-3p MIMAT0017782 Ectocarpus siliculosus miR3451-3p 12 80
bta-miR-2903 MIMAT0013861 Bos taurus miR-2903 12 80
oan-miR-1421i-3-3p MIMAT0009178 Ornithorhynchus anatinus miR-142... 12 80
oan-miR-1421i-2-3p MIMAT0009177 Ornithorhynchus anatinus miR-142... 12 80
oan-miR-1413-3p MIMAT0007233 Ornithorhynchus anatinus miR-1413-3p 12 80
rrv-miR-rR1-6-5p MIMAT0004413 Rhesus monkey miR-rR1-6-5p 12 80
hsa-miR-579-5p MIMAT0026616 Homo sapiens miR-579-5p 12 80
kshv-miR-K12-3-3p MIMAT0002194 Kaposi sarcoma-associated miR-K12... 12 80
>ppc-miR-8340-5p MIMAT0033225 Pristionchus pacificus miR-8340-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgcgga 7
|||||||
Sbjct: 2 tcgcgga 8
>mdo-miR-7311-3p MIMAT0028621 Monodelphis domestica miR-7311-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgcgga 7
|||||||
Sbjct: 7 tcgcgga 1
>ame-miR-3784 MIMAT0018563 Apis mellifera miR-3784
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgcgga 7
|||||||
Sbjct: 1 tcgcgga 7
>sma-miR-8470-5p MIMAT0033659 Schistosoma mansoni miR-8470-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcgga 7
||||||
Sbjct: 1 cgcgga 6
>prd-miR-7942-5p MIMAT0030744 Panagrellus redivivus miR-7942-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcgga 7
||||||
Sbjct: 3 cgcgga 8
>bta-miR-6530 MIMAT0025566 Bos taurus miR-6530
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcgga 7
||||||
Sbjct: 1 cgcgga 6
>hvsa-miR-HSUR5-5p MIMAT0022682 Herpesvirus saimiri miR-HSUR5-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcgga 7
||||||
Sbjct: 6 cgcgga 1
>dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster
miR-4955-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcgga 7
||||||
Sbjct: 1 cgcgga 6
>pma-miR-4580 MIMAT0019613 Petromyzon marinus miR-4580
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcgga 7
||||||
Sbjct: 8 cgcgga 3
>pma-miR-4556 MIMAT0019588 Petromyzon marinus miR-4556
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgcgg 6
||||||
Sbjct: 6 tcgcgg 1
>ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcgga 7
||||||
Sbjct: 1 cgcgga 6
>ppy-miR-937 MIMAT0016137 Pongo pygmaeus miR-937
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcgga 7
||||||
Sbjct: 7 cgcgga 2
>esi-miR3451-3p MIMAT0017782 Ectocarpus siliculosus miR3451-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcgg 6
||||||
Sbjct: 1 tcgcgg 6
>bta-miR-2903 MIMAT0013861 Bos taurus miR-2903
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgcgga 7
||||||
Sbjct: 7 cgcgga 2
>oan-miR-1421i-3-3p MIMAT0009178 Ornithorhynchus anatinus
miR-1421i-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgcgg 6
||||||
Sbjct: 8 tcgcgg 3
>oan-miR-1421i-2-3p MIMAT0009177 Ornithorhynchus anatinus
miR-1421i-2-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgcgg 6
||||||
Sbjct: 8 tcgcgg 3
>oan-miR-1413-3p MIMAT0007233 Ornithorhynchus anatinus
miR-1413-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgcgg 6
||||||
Sbjct: 8 tcgcgg 3
>rrv-miR-rR1-6-5p MIMAT0004413 Rhesus monkey miR-rR1-6-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgcgga 7
||||||
Sbjct: 1 cgcgga 6
>hsa-miR-579-5p MIMAT0026616 Homo sapiens miR-579-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcgg 6
||||||
Sbjct: 1 tcgcgg 6
>kshv-miR-K12-3-3p MIMAT0002194 Kaposi sarcoma-associated
miR-K12-3-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgcgg 6
||||||
Sbjct: 1 tcgcgg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 31
Number of extensions: 28
Number of successful extensions: 20
Number of sequences better than 100.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)