BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rcmv-miR-r111.2-6
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ppc-miR-8340-5p MIMAT0033225 Pristionchus pacificus miR-8340-5p        14      20
mdo-miR-7311-3p MIMAT0028621 Monodelphis domestica miR-7311-3p         14      20
ame-miR-3784 MIMAT0018563 Apis mellifera miR-3784                      14      20
sma-miR-8470-5p MIMAT0033659 Schistosoma mansoni miR-8470-5p           12      80
prd-miR-7942-5p MIMAT0030744 Panagrellus redivivus miR-7942-5p         12      80
bta-miR-6530 MIMAT0025566 Bos taurus miR-6530                          12      80
hvsa-miR-HSUR5-5p MIMAT0022682 Herpesvirus saimiri miR-HSUR5-5p        12      80
dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster miR-4955-5p       12      80
pma-miR-4580 MIMAT0019613 Petromyzon marinus miR-4580                  12      80
pma-miR-4556 MIMAT0019588 Petromyzon marinus miR-4556                  12      80
ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746                      12      80
ppy-miR-937 MIMAT0016137 Pongo pygmaeus miR-937                        12      80
esi-miR3451-3p MIMAT0017782 Ectocarpus siliculosus miR3451-3p          12      80
bta-miR-2903 MIMAT0013861 Bos taurus miR-2903                          12      80
oan-miR-1421i-3-3p MIMAT0009178 Ornithorhynchus anatinus miR-142...    12      80
oan-miR-1421i-2-3p MIMAT0009177 Ornithorhynchus anatinus miR-142...    12      80
oan-miR-1413-3p MIMAT0007233 Ornithorhynchus anatinus miR-1413-3p      12      80
rrv-miR-rR1-6-5p MIMAT0004413 Rhesus monkey miR-rR1-6-5p               12      80
hsa-miR-579-5p MIMAT0026616 Homo sapiens miR-579-5p                    12      80
kshv-miR-K12-3-3p MIMAT0002194 Kaposi sarcoma-associated miR-K12...    12      80
>ppc-miR-8340-5p MIMAT0033225 Pristionchus pacificus miR-8340-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tcgcgga 7
         |||||||
Sbjct: 2 tcgcgga 8
>mdo-miR-7311-3p MIMAT0028621 Monodelphis domestica miR-7311-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tcgcgga 7
         |||||||
Sbjct: 7 tcgcgga 1
>ame-miR-3784 MIMAT0018563 Apis mellifera miR-3784
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tcgcgga 7
         |||||||
Sbjct: 1 tcgcgga 7
>sma-miR-8470-5p MIMAT0033659 Schistosoma mansoni miR-8470-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgcgga 7
         ||||||
Sbjct: 1 cgcgga 6
>prd-miR-7942-5p MIMAT0030744 Panagrellus redivivus miR-7942-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgcgga 7
         ||||||
Sbjct: 3 cgcgga 8
>bta-miR-6530 MIMAT0025566 Bos taurus miR-6530
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgcgga 7
         ||||||
Sbjct: 1 cgcgga 6
>hvsa-miR-HSUR5-5p MIMAT0022682 Herpesvirus saimiri miR-HSUR5-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgcgga 7
         ||||||
Sbjct: 6 cgcgga 1
>dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster
         miR-4955-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgcgga 7
         ||||||
Sbjct: 1 cgcgga 6
>pma-miR-4580 MIMAT0019613 Petromyzon marinus miR-4580
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgcgga 7
         ||||||
Sbjct: 8 cgcgga 3
>pma-miR-4556 MIMAT0019588 Petromyzon marinus miR-4556
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tcgcgg 6
         ||||||
Sbjct: 6 tcgcgg 1
>ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgcgga 7
         ||||||
Sbjct: 1 cgcgga 6
>ppy-miR-937 MIMAT0016137 Pongo pygmaeus miR-937
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgcgga 7
         ||||||
Sbjct: 7 cgcgga 2
>esi-miR3451-3p MIMAT0017782 Ectocarpus siliculosus miR3451-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tcgcgg 6
         ||||||
Sbjct: 1 tcgcgg 6
>bta-miR-2903 MIMAT0013861 Bos taurus miR-2903
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 cgcgga 7
         ||||||
Sbjct: 7 cgcgga 2
>oan-miR-1421i-3-3p MIMAT0009178 Ornithorhynchus anatinus
         miR-1421i-3-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tcgcgg 6
         ||||||
Sbjct: 8 tcgcgg 3
>oan-miR-1421i-2-3p MIMAT0009177 Ornithorhynchus anatinus
         miR-1421i-2-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tcgcgg 6
         ||||||
Sbjct: 8 tcgcgg 3
>oan-miR-1413-3p MIMAT0007233 Ornithorhynchus anatinus
         miR-1413-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tcgcgg 6
         ||||||
Sbjct: 8 tcgcgg 3
>rrv-miR-rR1-6-5p MIMAT0004413 Rhesus monkey miR-rR1-6-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 cgcgga 7
         ||||||
Sbjct: 1 cgcgga 6
>hsa-miR-579-5p MIMAT0026616 Homo sapiens miR-579-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tcgcgg 6
         ||||||
Sbjct: 1 tcgcgg 6
>kshv-miR-K12-3-3p MIMAT0002194 Kaposi sarcoma-associated
         miR-K12-3-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 1 tcgcgg 6
         ||||||
Sbjct: 1 tcgcgg 6
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 31
Number of extensions: 28
Number of successful extensions: 20
Number of sequences better than 100.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)