BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hsv2-miR-h9-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bfv-miR-BF1-5p MIMAT0035753 Bovine foamy miR-BF1-5p 14 20
mmu-miR-3569-5p MIMAT0029854 Mus musculus miR-3569-5p 14 20
pti-miR5475 MIMAT0022108 Phaeodactylum tricornutum miR5475 14 20
hsv2-miR-H9-5p MIMAT0015376 Herpes Simplex miR-H9-5p 14 20
bhv1-miR-B5 MIMAT0013966 Bovine herpesvirus miR-B5 14 20
ssc-miR-9824-5p MIMAT0037042 Sus scrofa miR-9824-5p 12 80
bdi-miR5174f MIMAT0035538 Brachypodium distachyon miR5174f 12 80
efu-miR-9280 MIMAT0034918 Eptesicus fuscus miR-9280 12 80
str-miR-87a-5p MIMAT0033402 Strongyloides ratti miR-87a-5p 12 80
bdi-miR5181c-5p MIMAT0030107 Brachypodium distachyon miR5181c-5p 12 80
bdi-miR5174d-5p MIMAT0030105 Brachypodium distachyon miR5174d-5p 12 80
bdi-miR5174c-5p MIMAT0030103 Brachypodium distachyon miR5174c-5p 12 80
gga-miR-6567-5p MIMAT0025639 Gallus gallus miR-6567-5p 12 80
bta-miR-6530 MIMAT0025566 Bos taurus miR-6530 12 80
bta-miR-6121-5p MIMAT0024592 Bos taurus miR-6121-5p 12 80
hco-miR-5943 MIMAT0023439 Haemonchus contortus miR-5943 12 80
pab-miR3706 MIMAT0018138 Picea abies miR3706 12 80
hsa-miR-3605-3p MIMAT0017982 Homo sapiens miR-3605-3p 12 80
ppy-miR-658 MIMAT0016091 Pongo pygmaeus miR-658 12 80
esi-miR3459-5p MIMAT0017775 Ectocarpus siliculosus miR3459-5p 12 80
esi-miR3464-5p MIMAT0017743 Ectocarpus siliculosus miR3464-5p 12 80
bmo-miR-3382-3p MIMAT0015576 Bombyx mori miR-3382-3p 12 80
tgu-miR-2957 MIMAT0014455 Taeniopygia guttata miR-2957 12 80
rlcv-miR-rL1-24-3p MIMAT0016948 Rhesus lymphocryptovirus miR-rL1... 12 80
hvt-miR-H4-5p MIMAT0012714 Herpesvirus of miR-H4-5p 12 80
mtr-miR1510a-3p MIMAT0010033 Medicago truncatula miR1510a-3p 12 80
aqu-miR-2018-5p MIMAT0009694 Amphimedon queenslandica miR-2018-5p 12 80
bta-miR-658 MIMAT0009362 Bos taurus miR-658 12 80
ptr-miR-658 MIMAT0008307 Pan troglodytes miR-658 12 80
hsa-miR-1470 MIMAT0007348 Homo sapiens miR-1470 12 80
tae-miR1130a MIMAT0005365 Triticum aestivum miR1130a 12 80
sme-miR-184-3p MIMAT0004000 Schmidtea mediterranea miR-184-3p 12 80
hsa-miR-658 MIMAT0003336 Homo sapiens miR-658 12 80
hcmv-miR-UL112-5p MIMAT0026552 Human cytomegalovirus miR-UL112-5p 12 80
>bfv-miR-BF1-5p MIMAT0035753 Bovine foamy miR-BF1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcggagg 7
|||||||
Sbjct: 2 tcggagg 8
>mmu-miR-3569-5p MIMAT0029854 Mus musculus miR-3569-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcggagg 7
|||||||
Sbjct: 1 tcggagg 7
>pti-miR5475 MIMAT0022108 Phaeodactylum tricornutum miR5475
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcggagg 7
|||||||
Sbjct: 1 tcggagg 7
>hsv2-miR-H9-5p MIMAT0015376 Herpes Simplex miR-H9-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcggagg 7
|||||||
Sbjct: 2 tcggagg 8
>bhv1-miR-B5 MIMAT0013966 Bovine herpesvirus miR-B5
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcggagg 7
|||||||
Sbjct: 2 tcggagg 8
>ssc-miR-9824-5p MIMAT0037042 Sus scrofa miR-9824-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagg 7
||||||
Sbjct: 3 cggagg 8
>bdi-miR5174f MIMAT0035538 Brachypodium distachyon miR5174f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagg 7
||||||
Sbjct: 6 cggagg 1
>efu-miR-9280 MIMAT0034918 Eptesicus fuscus miR-9280
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcggag 6
||||||
Sbjct: 8 tcggag 3
>str-miR-87a-5p MIMAT0033402 Strongyloides ratti miR-87a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcggag 6
||||||
Sbjct: 3 tcggag 8
>bdi-miR5181c-5p MIMAT0030107 Brachypodium distachyon
miR5181c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagg 7
||||||
Sbjct: 6 cggagg 1
>bdi-miR5174d-5p MIMAT0030105 Brachypodium distachyon
miR5174d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagg 7
||||||
Sbjct: 8 cggagg 3
>bdi-miR5174c-5p MIMAT0030103 Brachypodium distachyon
miR5174c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagg 7
||||||
Sbjct: 8 cggagg 3
>gga-miR-6567-5p MIMAT0025639 Gallus gallus miR-6567-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcggag 6
||||||
Sbjct: 8 tcggag 3
>bta-miR-6530 MIMAT0025566 Bos taurus miR-6530
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagg 7
||||||
Sbjct: 3 cggagg 8
>bta-miR-6121-5p MIMAT0024592 Bos taurus miR-6121-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcggag 6
||||||
Sbjct: 1 tcggag 6
>hco-miR-5943 MIMAT0023439 Haemonchus contortus miR-5943
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcggag 6
||||||
Sbjct: 3 tcggag 8
>pab-miR3706 MIMAT0018138 Picea abies miR3706
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcggag 6
||||||
Sbjct: 3 tcggag 8
>hsa-miR-3605-3p MIMAT0017982 Homo sapiens miR-3605-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagg 7
||||||
Sbjct: 6 cggagg 1
>ppy-miR-658 MIMAT0016091 Pongo pygmaeus miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagg 7
||||||
Sbjct: 3 cggagg 8
>esi-miR3459-5p MIMAT0017775 Ectocarpus siliculosus miR3459-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagg 7
||||||
Sbjct: 3 cggagg 8
>esi-miR3464-5p MIMAT0017743 Ectocarpus siliculosus miR3464-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcggag 6
||||||
Sbjct: 1 tcggag 6
>bmo-miR-3382-3p MIMAT0015576 Bombyx mori miR-3382-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagg 7
||||||
Sbjct: 8 cggagg 3
>tgu-miR-2957 MIMAT0014455 Taeniopygia guttata miR-2957
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcggag 6
||||||
Sbjct: 1 tcggag 6
>rlcv-miR-rL1-24-3p MIMAT0016948 Rhesus lymphocryptovirus
miR-rL1-24-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcggag 6
||||||
Sbjct: 3 tcggag 8
>hvt-miR-H4-5p MIMAT0012714 Herpesvirus of miR-H4-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagg 7
||||||
Sbjct: 3 cggagg 8
>mtr-miR1510a-3p MIMAT0010033 Medicago truncatula miR1510a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagg 7
||||||
Sbjct: 1 cggagg 6
>aqu-miR-2018-5p MIMAT0009694 Amphimedon queenslandica
miR-2018-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcggag 6
||||||
Sbjct: 3 tcggag 8
>bta-miR-658 MIMAT0009362 Bos taurus miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagg 7
||||||
Sbjct: 3 cggagg 8
>ptr-miR-658 MIMAT0008307 Pan troglodytes miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagg 7
||||||
Sbjct: 3 cggagg 8
>hsa-miR-1470 MIMAT0007348 Homo sapiens miR-1470
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagg 7
||||||
Sbjct: 8 cggagg 3
>tae-miR1130a MIMAT0005365 Triticum aestivum miR1130a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagg 7
||||||
Sbjct: 6 cggagg 1
>sme-miR-184-3p MIMAT0004000 Schmidtea mediterranea miR-184-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagg 7
||||||
Sbjct: 3 cggagg 8
>hsa-miR-658 MIMAT0003336 Homo sapiens miR-658
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggagg 7
||||||
Sbjct: 3 cggagg 8
>hcmv-miR-UL112-5p MIMAT0026552 Human cytomegalovirus
miR-UL112-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggagg 7
||||||
Sbjct: 6 cggagg 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 39
Number of successful extensions: 34
Number of sequences better than 100.0: 34
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
