BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-7-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9224 MIMAT0034826 Eptesicus fuscus miR-9224 14 20
mmu-miR-7115-5p MIMAT0028127 Mus musculus miR-7115-5p 14 20
mmu-miR-1895 MIMAT0007867 Mus musculus miR-1895 14 20
ame-miR-9869 MIMAT0037273 Apis mellifera miR-9869 12 80
chi-miR-542-5p MIMAT0036272 Capra hircus miR-542-5p 12 80
bhv5-miR-B14 MIMAT0035711 Bovine herpesvirus miR-B14 12 80
efu-miR-9208 MIMAT0034798 Eptesicus fuscus miR-9208 12 80
efu-miR-9200b MIMAT0034786 Eptesicus fuscus miR-9200b 12 80
prd-miR-7911b-5p MIMAT0030648 Panagrellus redivivus miR-7911b-5p 12 80
prd-miR-7911a-5p MIMAT0030646 Panagrellus redivivus miR-7911a-5p 12 80
ssc-miR-7137-5p MIMAT0028149 Sus scrofa miR-7137-5p 12 80
mmu-miR-7083-5p MIMAT0028072 Mus musculus miR-7083-5p 12 80
hsa-miR-6889-5p MIMAT0027678 Homo sapiens miR-6889-5p 12 80
hsa-miR-6775-5p MIMAT0027450 Homo sapiens miR-6775-5p 12 80
gga-miR-6642-5p MIMAT0025739 Gallus gallus miR-6642-5p 12 80
osa-miR3979-3p MIMAT0019674 Oryza sativa miR3979-3p 12 80
tca-miR-3817-5p MIMAT0018658 Tribolium castaneum miR-3817-5p 12 80
ppy-miR-542-5p MIMAT0015991 Pongo pygmaeus miR-542-5p 12 80
tgu-miR-425-3p MIMAT0014471 Taeniopygia guttata miR-425-3p 12 80
ssc-miR-542-5p MIMAT0013924 Sus scrofa miR-542-5p 12 80
bta-miR-542-5p MIMAT0013594 Bos taurus miR-542-5p 12 80
bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724 12 80
bta-miR-2305 MIMAT0011817 Bos taurus miR-2305 12 80
bta-miR-2295 MIMAT0011803 Bos taurus miR-2295 12 80
cfa-miR-486-3p MIMAT0032036 Canis familiaris miR-486-3p 12 80
mml-miR-542-5p MIMAT0006406 Macaca mulatta miR-542-5p 12 80
hsa-miR-1237-5p MIMAT0022946 Homo sapiens miR-1237-5p 12 80
hsa-miR-542-5p MIMAT0003340 Homo sapiens miR-542-5p 12 80
>efu-miR-9224 MIMAT0034826 Eptesicus fuscus miR-9224
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcggggg 7
|||||||
Sbjct: 8 tcggggg 2
>mmu-miR-7115-5p MIMAT0028127 Mus musculus miR-7115-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcggggg 7
|||||||
Sbjct: 1 tcggggg 7
>mmu-miR-1895 MIMAT0007867 Mus musculus miR-1895
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcggggg 7
|||||||
Sbjct: 7 tcggggg 1
>ame-miR-9869 MIMAT0037273 Apis mellifera miR-9869
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>chi-miR-542-5p MIMAT0036272 Capra hircus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>bhv5-miR-B14 MIMAT0035711 Bovine herpesvirus miR-B14
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggg 7
||||||
Sbjct: 1 cggggg 6
>efu-miR-9208 MIMAT0034798 Eptesicus fuscus miR-9208
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggggg 7
||||||
Sbjct: 8 cggggg 3
>efu-miR-9200b MIMAT0034786 Eptesicus fuscus miR-9200b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggg 7
||||||
Sbjct: 3 cggggg 8
>prd-miR-7911b-5p MIMAT0030648 Panagrellus redivivus
miR-7911b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggggg 7
||||||
Sbjct: 8 cggggg 3
>prd-miR-7911a-5p MIMAT0030646 Panagrellus redivivus
miR-7911a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggggg 7
||||||
Sbjct: 8 cggggg 3
>ssc-miR-7137-5p MIMAT0028149 Sus scrofa miR-7137-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggg 7
||||||
Sbjct: 1 cggggg 6
>mmu-miR-7083-5p MIMAT0028072 Mus musculus miR-7083-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>hsa-miR-6889-5p MIMAT0027678 Homo sapiens miR-6889-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>hsa-miR-6775-5p MIMAT0027450 Homo sapiens miR-6775-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>gga-miR-6642-5p MIMAT0025739 Gallus gallus miR-6642-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgggg 6
||||||
Sbjct: 8 tcgggg 3
>osa-miR3979-3p MIMAT0019674 Oryza sativa miR3979-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 3 tcgggg 8
>tca-miR-3817-5p MIMAT0018658 Tribolium castaneum miR-3817-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>ppy-miR-542-5p MIMAT0015991 Pongo pygmaeus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>tgu-miR-425-3p MIMAT0014471 Taeniopygia guttata miR-425-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 3 tcgggg 8
>ssc-miR-542-5p MIMAT0013924 Sus scrofa miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>bta-miR-542-5p MIMAT0013594 Bos taurus miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>bmo-miR-2724 MIMAT0012600 Bombyx mori miR-2724
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cggggg 7
||||||
Sbjct: 7 cggggg 2
>bta-miR-2305 MIMAT0011817 Bos taurus miR-2305
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggg 7
||||||
Sbjct: 1 cggggg 6
>bta-miR-2295 MIMAT0011803 Bos taurus miR-2295
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>cfa-miR-486-3p MIMAT0032036 Canis familiaris miR-486-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>mml-miR-542-5p MIMAT0006406 Macaca mulatta miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
>hsa-miR-1237-5p MIMAT0022946 Homo sapiens miR-1237-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cggggg 7
||||||
Sbjct: 1 cggggg 6
>hsa-miR-542-5p MIMAT0003340 Homo sapiens miR-542-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgggg 6
||||||
Sbjct: 1 tcgggg 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 44
Number of extensions: 41
Number of successful extensions: 28
Number of sequences better than 100.0: 28
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 28
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
