BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-ul148d
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hcmv-miR-UL148D MIMAT0001578 Human cytomegalovirus miR-UL148D 16 6.9
mmu-miR-7036a-3p MIMAT0027977 Mus musculus miR-7036a-3p 14 27
hvu-miR6196 MIMAT0024822 Hordeum vulgare miR6196 14 27
osa-miR5819 MIMAT0023292 Oryza sativa miR5819 14 27
osa-miR5793 MIMAT0023260 Oryza sativa miR5793 14 27
rmi-miR-5332 MIMAT0021405 Rhipicephalus microplus miR-5332 14 27
mmu-miR-1947-5p MIMAT0009413 Mus musculus miR-1947-5p 14 27
gga-miR-1694 MIMAT0007586 Gallus gallus miR-1694 14 27
cel-miR-59-5p MIMAT0015101 Caenorhabditis elegans miR-59-5p 14 27
>hcmv-miR-UL148D MIMAT0001578 Human cytomegalovirus miR-UL148D
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgtcctc 8
||||||||
Sbjct: 1 tcgtcctc 8
>mmu-miR-7036a-3p MIMAT0027977 Mus musculus miR-7036a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgtcctc 8
|||||||
Sbjct: 2 cgtcctc 8
>hvu-miR6196 MIMAT0024822 Hordeum vulgare miR6196
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgtcct 7
|||||||
Sbjct: 7 tcgtcct 1
>osa-miR5819 MIMAT0023292 Oryza sativa miR5819
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgtcct 7
|||||||
Sbjct: 7 tcgtcct 1
>osa-miR5793 MIMAT0023260 Oryza sativa miR5793
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgtcctc 8
|||||||
Sbjct: 8 cgtcctc 2
>rmi-miR-5332 MIMAT0021405 Rhipicephalus microplus miR-5332
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgtcct 7
|||||||
Sbjct: 1 tcgtcct 7
>mmu-miR-1947-5p MIMAT0009413 Mus musculus miR-1947-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgtcct 7
|||||||
Sbjct: 7 tcgtcct 1
>gga-miR-1694 MIMAT0007586 Gallus gallus miR-1694
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgtcctc 8
|||||||
Sbjct: 8 cgtcctc 2
>cel-miR-59-5p MIMAT0015101 Caenorhabditis elegans miR-59-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgtcct 7
|||||||
Sbjct: 1 tcgtcct 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 97
Number of extensions: 87
Number of successful extensions: 71
Number of sequences better than 100.0: 9
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
