BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-22-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ppe-miR8128-3p MIMAT0031551 Prunus persica miR8128-3p 16 6.9
rno-miR-5132-5p MIMAT0035750 Rattus norvegicus miR-5132-5p 14 27
osa-miR5797 MIMAT0023265 Oryza sativa miR5797 14 27
bdi-miR5054 MIMAT0020763 Brachypodium distachyon miR5054 14 27
mmu-miR-5132-5p MIMAT0020643 Mus musculus miR-5132-5p 14 27
hsa-miR-3677-3p MIMAT0018101 Homo sapiens miR-3677-3p 14 27
ppy-miR-1909 MIMAT0016238 Pongo pygmaeus miR-1909 14 27
rlcv-miR-rL1-22-5p MIMAT0019189 Rhesus lymphocryptovirus miR-rL1... 14 27
>ppe-miR8128-3p MIMAT0031551 Prunus persica miR8128-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcgtgggg 8
||||||||
Sbjct: 1 tcgtgggg 8
>rno-miR-5132-5p MIMAT0035750 Rattus norvegicus miR-5132-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgtgggg 8
|||||||
Sbjct: 1 cgtgggg 7
>osa-miR5797 MIMAT0023265 Oryza sativa miR5797
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgtggg 7
|||||||
Sbjct: 1 tcgtggg 7
>bdi-miR5054 MIMAT0020763 Brachypodium distachyon miR5054
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cgtgggg 8
|||||||
Sbjct: 8 cgtgggg 2
>mmu-miR-5132-5p MIMAT0020643 Mus musculus miR-5132-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgtgggg 8
|||||||
Sbjct: 2 cgtgggg 8
>hsa-miR-3677-3p MIMAT0018101 Homo sapiens miR-3677-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgtggg 7
|||||||
Sbjct: 2 tcgtggg 8
>ppy-miR-1909 MIMAT0016238 Pongo pygmaeus miR-1909
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgtgggg 8
|||||||
Sbjct: 1 cgtgggg 7
>rlcv-miR-rL1-22-5p MIMAT0019189 Rhesus lymphocryptovirus
miR-rL1-22-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cgtgggg 8
|||||||
Sbjct: 1 cgtgggg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 107
Number of extensions: 98
Number of successful extensions: 68
Number of sequences better than 100.0: 8
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
