BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rrv-miR-rr1-4-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nve-miR-9437 MIMAT0035398 Nematostella vectensis miR-9437 14 20
gma-miR4399 MIMAT0018315 Glycine max miR4399 14 20
dvi-miR-13b-5p MIMAT0032064 Drosophila virilis miR-13b-5p 14 20
rrv-miR-rR1-4-3p MIMAT0004411 Rhesus monkey miR-rR1-4-3p 14 20
dme-miR-13b-1-5p MIMAT0020796 Drosophila melanogaster miR-13b-1-5p 14 20
gra-miR8762c MIMAT0034243 Gossypium raimondii miR8762c 12 80
gra-miR8762b MIMAT0034194 Gossypium raimondii miR8762b 12 80
gra-miR7502e MIMAT0034193 Gossypium raimondii miR7502e 12 80
sma-miR-8459-5p MIMAT0033633 Schistosoma mansoni miR-8459-5p 12 80
str-miR-87b-5p MIMAT0033472 Strongyloides ratti miR-87b-5p 12 80
str-miR-8377-5p MIMAT0033400 Strongyloides ratti miR-8377-5p 12 80
prd-miR-7971-5p MIMAT0030844 Panagrellus redivivus miR-7971-5p 12 80
ssc-miR-7141-3p MIMAT0028158 Sus scrofa miR-7141-3p 12 80
bma-miR-5844 MIMAT0026342 Brugia malayi miR-5844 12 80
hco-miR-5941 MIMAT0023436 Haemonchus contortus miR-5941 12 80
mtr-miR5755 MIMAT0023137 Medicago truncatula miR5755 12 80
cin-miR-4129-3p MIMAT0016724 Ciona intestinalis miR-4129-3p 12 80
cin-miR-4003c-3p MIMAT0016466 Ciona intestinalis miR-4003c-3p 12 80
bmo-miR-3345 MIMAT0015532 Bombyx mori miR-3345 12 80
api-miR-3022 MIMAT0014758 Acyrthosiphon pisum miR-3022 12 80
>nve-miR-9437 MIMAT0035398 Nematostella vectensis miR-9437
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgttaa 7
|||||||
Sbjct: 7 tcgttaa 1
>gma-miR4399 MIMAT0018315 Glycine max miR4399
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcgttaa 7
|||||||
Sbjct: 7 tcgttaa 1
>dvi-miR-13b-5p MIMAT0032064 Drosophila virilis miR-13b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgttaa 7
|||||||
Sbjct: 1 tcgttaa 7
>rrv-miR-rR1-4-3p MIMAT0004411 Rhesus monkey miR-rR1-4-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgttaa 7
|||||||
Sbjct: 2 tcgttaa 8
>dme-miR-13b-1-5p MIMAT0020796 Drosophila melanogaster
miR-13b-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcgttaa 7
|||||||
Sbjct: 1 tcgttaa 7
>gra-miR8762c MIMAT0034243 Gossypium raimondii miR8762c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttaa 7
||||||
Sbjct: 6 cgttaa 1
>gra-miR8762b MIMAT0034194 Gossypium raimondii miR8762b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttaa 7
||||||
Sbjct: 6 cgttaa 1
>gra-miR7502e MIMAT0034193 Gossypium raimondii miR7502e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttaa 7
||||||
Sbjct: 6 cgttaa 1
>sma-miR-8459-5p MIMAT0033633 Schistosoma mansoni miR-8459-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgtta 6
||||||
Sbjct: 6 tcgtta 1
>str-miR-87b-5p MIMAT0033472 Strongyloides ratti miR-87b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttaa 7
||||||
Sbjct: 1 cgttaa 6
>str-miR-8377-5p MIMAT0033400 Strongyloides ratti miR-8377-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttaa 7
||||||
Sbjct: 7 cgttaa 2
>prd-miR-7971-5p MIMAT0030844 Panagrellus redivivus miR-7971-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttaa 7
||||||
Sbjct: 3 cgttaa 8
>ssc-miR-7141-3p MIMAT0028158 Sus scrofa miR-7141-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttaa 7
||||||
Sbjct: 8 cgttaa 3
>bma-miR-5844 MIMAT0026342 Brugia malayi miR-5844
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgtta 6
||||||
Sbjct: 6 tcgtta 1
>hco-miR-5941 MIMAT0023436 Haemonchus contortus miR-5941
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgtta 6
||||||
Sbjct: 6 tcgtta 1
>mtr-miR5755 MIMAT0023137 Medicago truncatula miR5755
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cgttaa 7
||||||
Sbjct: 8 cgttaa 3
>cin-miR-4129-3p MIMAT0016724 Ciona intestinalis miR-4129-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cgttaa 7
||||||
Sbjct: 3 cgttaa 8
>cin-miR-4003c-3p MIMAT0016466 Ciona intestinalis miR-4003c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcgtta 6
||||||
Sbjct: 6 tcgtta 1
>bmo-miR-3345 MIMAT0015532 Bombyx mori miR-3345
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgtta 6
||||||
Sbjct: 3 tcgtta 8
>api-miR-3022 MIMAT0014758 Acyrthosiphon pisum miR-3022
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcgtta 6
||||||
Sbjct: 3 tcgtta 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 29
Number of extensions: 24
Number of successful extensions: 20
Number of sequences better than 100.0: 20
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 20
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
