BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-17-28
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-331-5p MIMAT0036145 Capra hircus miR-331-5p 14 27
str-miR-8400-3p MIMAT0033495 Strongyloides ratti miR-8400-3p 14 27
osa-miR7694-5p MIMAT0029959 Oryza sativa miR7694-5p 14 27
ssc-miR-331-5p MIMAT0013929 Sus scrofa miR-331-5p 14 27
sme-miR-2e-5p MIMAT0011400 Schmidtea mediterranea miR-2e-5p 14 27
osa-miR1862d MIMAT0007830 Oryza sativa miR1862d 14 27
bta-miR-331-5p MIMAT0026716 Bos taurus miR-331-5p 14 27
rlcv-miR-rL1-5-5p MIMAT0003432 Rhesus lymphocryptovirus miR-rL1-... 14 27
>chi-miR-331-5p MIMAT0036145 Capra hircus miR-331-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctaggt 7
|||||||
Sbjct: 1 tctaggt 7
>str-miR-8400-3p MIMAT0033495 Strongyloides ratti miR-8400-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctaggt 7
|||||||
Sbjct: 2 tctaggt 8
>osa-miR7694-5p MIMAT0029959 Oryza sativa miR7694-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctaggtt 8
|||||||
Sbjct: 7 ctaggtt 1
>ssc-miR-331-5p MIMAT0013929 Sus scrofa miR-331-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctaggt 7
|||||||
Sbjct: 1 tctaggt 7
>sme-miR-2e-5p MIMAT0011400 Schmidtea mediterranea miR-2e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctaggtt 8
|||||||
Sbjct: 8 ctaggtt 2
>osa-miR1862d MIMAT0007830 Oryza sativa miR1862d
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctaggtt 8
|||||||
Sbjct: 2 ctaggtt 8
>bta-miR-331-5p MIMAT0026716 Bos taurus miR-331-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctaggt 7
|||||||
Sbjct: 1 tctaggt 7
>rlcv-miR-rL1-5-5p MIMAT0003432 Rhesus lymphocryptovirus
miR-rL1-5-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctaggtt 8
|||||||
Sbjct: 7 ctaggtt 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 94
Number of extensions: 86
Number of successful extensions: 77
Number of sequences better than 100.0: 8
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 8
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
