BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-2-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
aly-miR3444b MIMAT0017920 Arabidopsis lyrata miR3444b 14 20
bmo-miR-3221 MIMAT0015401 Bombyx mori miR-3221 14 20
dps-miR-2573-3p MIMAT0012417 Drosophila pseudoobscura miR-2573-3p 14 20
dvi-miR-9538-3p MIMAT0035619 Drosophila virilis miR-9538-3p 12 80
esi-miR8623d MIMAT0033968 Ectocarpus siliculosus miR8623d 12 80
esi-miR8623a MIMAT0033960 Ectocarpus siliculosus miR8623a 12 80
pxy-miR-279b-5p MIMAT0033819 Plutella xylostella miR-279b-5p 12 80
pxy-miR-8527 MIMAT0033769 Plutella xylostella miR-8527 12 80
pxy-miR-8508 MIMAT0033728 Plutella xylostella miR-8508 12 80
bbe-miR-4891-5p MIMAT0031708 Branchiostoma belcheri miR-4891-5p 12 80
stu-miR1886i-5p MIMAT0030925 Solanum tuberosum miR1886i-5p 12 80
stu-miR1886g-5p MIMAT0030900 Solanum tuberosum miR1886g-5p 12 80
stu-miR7980a MIMAT0030847 Solanum tuberosum miR7980a 12 80
gga-miR-7448-5p MIMAT0029050 Gallus gallus miR-7448-5p 12 80
mml-miR-1245-3p MIMAT0028251 Macaca mulatta miR-1245-3p 12 80
cme-miR854 MIMAT0026100 Cucumis melo miR854 12 80
mmu-miR-7063-5p MIMAT0028030 Mus musculus miR-7063-5p 12 80
hsa-miR-6891-3p MIMAT0027683 Homo sapiens miR-6891-3p 12 80
gga-miR-6565-5p MIMAT0025635 Gallus gallus miR-6565-5p 12 80
prv-miR-LLT2 MIMAT0025305 Pseudorabies virus miR-LLT2 12 80
mml-miR-1255a-5p MIMAT0024320 Macaca mulatta miR-1255a-5p 12 80
ggo-miR-3605 MIMAT0024236 Gorilla gorilla miR-3605 12 80
ggo-miR-1255a MIMAT0024176 Gorilla gorilla miR-1255a 12 80
hsa-miR-6072 MIMAT0023697 Homo sapiens miR-6072 12 80
sha-miR-340 MIMAT0022775 Sarcophilus harrisii miR-340 12 80
mtr-miR2590g MIMAT0021309 Medicago truncatula miR2590g 12 80
mtr-miR5244 MIMAT0021240 Medicago truncatula miR5244 12 80
mmu-miR-5119 MIMAT0020627 Mus musculus miR-5119 12 80
dme-miR-4965-5p MIMAT0020188 Drosophila melanogaster miR-4965-5p 12 80
bfl-miR-4891-5p MIMAT0020480 Branchiostoma floridae miR-4891-5p 12 80
mghv-miR-M1-13-3p MIMAT0018173 Mouse gammaherpesvirus miR-M1-13-3p 12 80
hsa-miR-3672 MIMAT0018095 Homo sapiens miR-3672 12 80
ath-miR854e MIMAT0018504 Arabidopsis thaliana miR854e 12 80
gso-miR1507b MIMAT0016358 Glycine soja miR1507b 12 80
gso-miR1507a MIMAT0016357 Glycine soja miR1507a 12 80
ppy-miR-1255a MIMAT0016180 Pongo pygmaeus miR-1255a 12 80
ppy-miR-556-5p MIMAT0016002 Pongo pygmaeus miR-556-5p 12 80
aly-miR3444a-3p MIMAT0017722 Arabidopsis lyrata miR3444a-3p 12 80
hvt-miR-H9-5p MIMAT0012721 Herpesvirus of miR-H9-5p 12 80
bmo-miR-279d-5p MIMAT0013606 Bombyx mori miR-279d-5p 12 80
dps-miR-2515 MIMAT0012300 Drosophila pseudoobscura miR-2515 12 80
vun-miR1507b MIMAT0011178 Vigna unguiculata miR1507b 12 80
vun-miR1507a MIMAT0010089 Vigna unguiculata miR1507a 12 80
gma-miR1507b MIMAT0010080 Glycine max miR1507b 12 80
tca-miR-2a-5p MIMAT0019094 Tribolium castaneum miR-2a-5p 12 80
ptr-miR-1255b MIMAT0007980 Pan troglodytes miR-1255b 12 80
mml-miR-452-3p MIMAT0026879 Macaca mulatta miR-452-3p 12 80
gma-miR1507a MIMAT0007365 Glycine max miR1507a 12 80
oan-miR-1371 MIMAT0007036 Ornithorhynchus anatinus miR-1371 12 80
hsa-miR-1255b-5p MIMAT0005945 Homo sapiens miR-1255b-5p 12 80
hsa-miR-1255a MIMAT0005906 Homo sapiens miR-1255a 12 80
ath-miR854d MIMAT0004283 Arabidopsis thaliana miR854d 12 80
ath-miR854c MIMAT0004282 Arabidopsis thaliana miR854c 12 80
ath-miR854b MIMAT0004281 Arabidopsis thaliana miR854b 12 80
ath-miR854a MIMAT0004280 Arabidopsis thaliana miR854a 12 80
sme-miR-71c-3p MIMAT0012107 Schmidtea mediterranea miR-71c-3p 12 80
sme-miR-71a-1-3p MIMAT0012106 Schmidtea mediterranea miR-71a-1-3p 12 80
hsa-miR-556-5p MIMAT0003220 Homo sapiens miR-556-5p 12 80
hsa-miR-452-3p MIMAT0001636 Homo sapiens miR-452-3p 12 80
>aly-miR3444b MIMAT0017920 Arabidopsis lyrata miR3444b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctcatc 7
|||||||
Sbjct: 2 tctcatc 8
>bmo-miR-3221 MIMAT0015401 Bombyx mori miR-3221
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctcatc 7
|||||||
Sbjct: 1 tctcatc 7
>dps-miR-2573-3p MIMAT0012417 Drosophila pseudoobscura
miR-2573-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctcatc 7
|||||||
Sbjct: 1 tctcatc 7
>dvi-miR-9538-3p MIMAT0035619 Drosophila virilis miR-9538-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctcat 6
||||||
Sbjct: 6 tctcat 1
>esi-miR8623d MIMAT0033968 Ectocarpus siliculosus miR8623d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 1 tctcat 6
>esi-miR8623a MIMAT0033960 Ectocarpus siliculosus miR8623a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 1 tctcat 6
>pxy-miR-279b-5p MIMAT0033819 Plutella xylostella miR-279b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>pxy-miR-8527 MIMAT0033769 Plutella xylostella miR-8527
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctcat 6
||||||
Sbjct: 8 tctcat 3
>pxy-miR-8508 MIMAT0033728 Plutella xylostella miR-8508
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctcat 6
||||||
Sbjct: 6 tctcat 1
>bbe-miR-4891-5p MIMAT0031708 Branchiostoma belcheri miR-4891-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>stu-miR1886i-5p MIMAT0030925 Solanum tuberosum miR1886i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctcat 6
||||||
Sbjct: 6 tctcat 1
>stu-miR1886g-5p MIMAT0030900 Solanum tuberosum miR1886g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>stu-miR7980a MIMAT0030847 Solanum tuberosum miR7980a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctcat 6
||||||
Sbjct: 6 tctcat 1
>gga-miR-7448-5p MIMAT0029050 Gallus gallus miR-7448-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcatc 7
||||||
Sbjct: 1 ctcatc 6
>mml-miR-1245-3p MIMAT0028251 Macaca mulatta miR-1245-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>cme-miR854 MIMAT0026100 Cucumis melo miR854
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>mmu-miR-7063-5p MIMAT0028030 Mus musculus miR-7063-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctcat 6
||||||
Sbjct: 6 tctcat 1
>hsa-miR-6891-3p MIMAT0027683 Homo sapiens miR-6891-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcatc 7
||||||
Sbjct: 3 ctcatc 8
>gga-miR-6565-5p MIMAT0025635 Gallus gallus miR-6565-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctcat 6
||||||
Sbjct: 6 tctcat 1
>prv-miR-LLT2 MIMAT0025305 Pseudorabies virus miR-LLT2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcatc 7
||||||
Sbjct: 1 ctcatc 6
>mml-miR-1255a-5p MIMAT0024320 Macaca mulatta miR-1255a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>ggo-miR-3605 MIMAT0024236 Gorilla gorilla miR-3605
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>ggo-miR-1255a MIMAT0024176 Gorilla gorilla miR-1255a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>hsa-miR-6072 MIMAT0023697 Homo sapiens miR-6072
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcatc 7
||||||
Sbjct: 3 ctcatc 8
>sha-miR-340 MIMAT0022775 Sarcophilus harrisii miR-340
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 3 tctcat 8
>mtr-miR2590g MIMAT0021309 Medicago truncatula miR2590g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctcat 6
||||||
Sbjct: 8 tctcat 3
>mtr-miR5244 MIMAT0021240 Medicago truncatula miR5244
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 3 tctcat 8
>mmu-miR-5119 MIMAT0020627 Mus musculus miR-5119
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 3 tctcat 8
>dme-miR-4965-5p MIMAT0020188 Drosophila melanogaster
miR-4965-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>bfl-miR-4891-5p MIMAT0020480 Branchiostoma floridae miR-4891-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>mghv-miR-M1-13-3p MIMAT0018173 Mouse gammaherpesvirus
miR-M1-13-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 3 tctcat 8
>hsa-miR-3672 MIMAT0018095 Homo sapiens miR-3672
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctcat 6
||||||
Sbjct: 6 tctcat 1
>ath-miR854e MIMAT0018504 Arabidopsis thaliana miR854e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>gso-miR1507b MIMAT0016358 Glycine soja miR1507b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 1 tctcat 6
>gso-miR1507a MIMAT0016357 Glycine soja miR1507a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 1 tctcat 6
>ppy-miR-1255a MIMAT0016180 Pongo pygmaeus miR-1255a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>ppy-miR-556-5p MIMAT0016002 Pongo pygmaeus miR-556-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>aly-miR3444a-3p MIMAT0017722 Arabidopsis lyrata miR3444a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 3 tctcat 8
>hvt-miR-H9-5p MIMAT0012721 Herpesvirus of miR-H9-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 3 tctcat 8
>bmo-miR-279d-5p MIMAT0013606 Bombyx mori miR-279d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>dps-miR-2515 MIMAT0012300 Drosophila pseudoobscura miR-2515
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 7 ctcatc 2
>vun-miR1507b MIMAT0011178 Vigna unguiculata miR1507b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 1 tctcat 6
>vun-miR1507a MIMAT0010089 Vigna unguiculata miR1507a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 1 tctcat 6
>gma-miR1507b MIMAT0010080 Glycine max miR1507b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 1 tctcat 6
>tca-miR-2a-5p MIMAT0019094 Tribolium castaneum miR-2a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcatc 7
||||||
Sbjct: 1 ctcatc 6
>ptr-miR-1255b MIMAT0007980 Pan troglodytes miR-1255b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>mml-miR-452-3p MIMAT0026879 Macaca mulatta miR-452-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 3 tctcat 8
>gma-miR1507a MIMAT0007365 Glycine max miR1507a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 1 tctcat 6
>oan-miR-1371 MIMAT0007036 Ornithorhynchus anatinus miR-1371
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>hsa-miR-1255b-5p MIMAT0005945 Homo sapiens miR-1255b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>hsa-miR-1255a MIMAT0005906 Homo sapiens miR-1255a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 8 ctcatc 3
>ath-miR854d MIMAT0004283 Arabidopsis thaliana miR854d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>ath-miR854c MIMAT0004282 Arabidopsis thaliana miR854c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>ath-miR854b MIMAT0004281 Arabidopsis thaliana miR854b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>ath-miR854a MIMAT0004280 Arabidopsis thaliana miR854a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>sme-miR-71c-3p MIMAT0012107 Schmidtea mediterranea miR-71c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 1 tctcat 6
>sme-miR-71a-1-3p MIMAT0012106 Schmidtea mediterranea
miR-71a-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctcat 6
||||||
Sbjct: 1 tctcat 6
>hsa-miR-556-5p MIMAT0003220 Homo sapiens miR-556-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctcatc 7
||||||
Sbjct: 6 ctcatc 1
>hsa-miR-452-3p MIMAT0001636 Homo sapiens miR-452-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctcatc 7
||||||
Sbjct: 1 ctcatc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 80
Number of extensions: 77
Number of successful extensions: 59
Number of sequences better than 100.0: 59
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 59
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
