BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-2-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dps-miR-2573-3p MIMAT0012417 Drosophila pseudoobscura miR-2573-3p 16 6.9
gga-miR-7448-5p MIMAT0029050 Gallus gallus miR-7448-5p 14 27
gga-miR-7445-3p MIMAT0029045 Gallus gallus miR-7445-3p 14 27
hsa-miR-6870-3p MIMAT0027641 Homo sapiens miR-6870-3p 14 27
prv-miR-LLT2 MIMAT0025305 Pseudorabies virus miR-LLT2 14 27
mml-miR-1255a-5p MIMAT0024320 Macaca mulatta miR-1255a-5p 14 27
ggo-miR-1255a MIMAT0024176 Gorilla gorilla miR-1255a 14 27
dme-miR-4971-5p MIMAT0020198 Drosophila melanogaster miR-4971-5p 14 27
aly-miR3444b MIMAT0017920 Arabidopsis lyrata miR3444b 14 27
ppy-miR-1255b MIMAT0016181 Pongo pygmaeus miR-1255b 14 27
ppy-miR-1255a MIMAT0016180 Pongo pygmaeus miR-1255a 14 27
bmo-miR-3221 MIMAT0015401 Bombyx mori miR-3221 14 27
ptr-miR-1255b MIMAT0007980 Pan troglodytes miR-1255b 14 27
hsa-miR-1255b-5p MIMAT0005945 Homo sapiens miR-1255b-5p 14 27
hsa-miR-1255a MIMAT0005906 Homo sapiens miR-1255a 14 27
>dps-miR-2573-3p MIMAT0012417 Drosophila pseudoobscura
miR-2573-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctcatcc 8
||||||||
Sbjct: 1 tctcatcc 8
>gga-miR-7448-5p MIMAT0029050 Gallus gallus miR-7448-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctcatcc 8
|||||||
Sbjct: 1 ctcatcc 7
>gga-miR-7445-3p MIMAT0029045 Gallus gallus miR-7445-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctcatcc 8
|||||||
Sbjct: 7 ctcatcc 1
>hsa-miR-6870-3p MIMAT0027641 Homo sapiens miR-6870-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctcatcc 8
|||||||
Sbjct: 2 ctcatcc 8
>prv-miR-LLT2 MIMAT0025305 Pseudorabies virus miR-LLT2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctcatcc 8
|||||||
Sbjct: 1 ctcatcc 7
>mml-miR-1255a-5p MIMAT0024320 Macaca mulatta miR-1255a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctcatcc 8
|||||||
Sbjct: 8 ctcatcc 2
>ggo-miR-1255a MIMAT0024176 Gorilla gorilla miR-1255a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctcatcc 8
|||||||
Sbjct: 8 ctcatcc 2
>dme-miR-4971-5p MIMAT0020198 Drosophila melanogaster
miR-4971-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctcatcc 8
|||||||
Sbjct: 7 ctcatcc 1
>aly-miR3444b MIMAT0017920 Arabidopsis lyrata miR3444b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctcatc 7
|||||||
Sbjct: 2 tctcatc 8
>ppy-miR-1255b MIMAT0016181 Pongo pygmaeus miR-1255b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctcatcc 8
|||||||
Sbjct: 7 ctcatcc 1
>ppy-miR-1255a MIMAT0016180 Pongo pygmaeus miR-1255a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctcatcc 8
|||||||
Sbjct: 8 ctcatcc 2
>bmo-miR-3221 MIMAT0015401 Bombyx mori miR-3221
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctcatc 7
|||||||
Sbjct: 1 tctcatc 7
>ptr-miR-1255b MIMAT0007980 Pan troglodytes miR-1255b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctcatcc 8
|||||||
Sbjct: 8 ctcatcc 2
>hsa-miR-1255b-5p MIMAT0005945 Homo sapiens miR-1255b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctcatcc 8
|||||||
Sbjct: 8 ctcatcc 2
>hsa-miR-1255a MIMAT0005906 Homo sapiens miR-1255a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctcatcc 8
|||||||
Sbjct: 8 ctcatcc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 132
Number of extensions: 116
Number of successful extensions: 94
Number of sequences better than 100.0: 15
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
