BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m23*
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hsa-miR-5091 MIMAT0021083 Homo sapiens miR-5091 14 20
osa-miR5075 MIMAT0020561 Oryza sativa miR5075 14 20
rno-miR-802-3p MIMAT0017362 Rattus norvegicus miR-802-3p 14 20
mdv2-miR-M23-3p MIMAT0012542 Mareks disease miR-M23-3p 14 20
mmu-miR-802-3p MIMAT0017240 Mus musculus miR-802-3p 14 20
chi-miR-1468-5p MIMAT0035969 Capra hircus miR-1468-5p 12 80
bdi-miR5174f MIMAT0035538 Brachypodium distachyon miR5174f 12 80
eca-miR-9167 MIMAT0034745 Equus caballus miR-9167 12 80
cfa-miR-1468 MIMAT0034423 Canis familiaris miR-1468 12 80
mmu-miR-8112 MIMAT0031418 Mus musculus miR-8112 12 80
gga-miR-7474-5p MIMAT0029102 Gallus gallus miR-7474-5p 12 80
mdo-miR-7317-5p MIMAT0028634 Monodelphis domestica miR-7317-5p 12 80
mml-miR-7187-5p MIMAT0028328 Macaca mulatta miR-7187-5p 12 80
ssc-miR-7142-5p MIMAT0028159 Sus scrofa miR-7142-5p 12 80
sbi-miR6224c-5p MIMAT0026418 Sorghum bicolor miR6224c-5p 12 80
sbi-miR6224b-5p MIMAT0026416 Sorghum bicolor miR6224b-5p 12 80
sbi-miR6224a-5p MIMAT0026414 Sorghum bicolor miR6224a-5p 12 80
bma-miR-5856b MIMAT0026355 Brugia malayi miR-5856b 12 80
bta-miR-3957 MIMAT0025548 Bos taurus miR-3957 12 80
bta-miR-6518 MIMAT0025536 Bos taurus miR-6518 12 80
ssc-miR-1468 MIMAT0025386 Sus scrofa miR-1468 12 80
pde-miR949b MIMAT0025341 Pinus densata miR949b 12 80
mmu-miR-6416-5p MIMAT0025170 Mus musculus miR-6416-5p 12 80
ggo-miR-3615 MIMAT0024281 Gorilla gorilla miR-3615 12 80
bdi-miR5174a MIMAT0020718 Brachypodium distachyon miR5174a 12 80
rgl-miR5137 MIMAT0020648 Rehmannia glutinosa miR5137 12 80
dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster miR-4955-5p 12 80
pma-miR-25b-5p MIMAT0019406 Petromyzon marinus miR-25b-5p 12 80
oar-miR-3957-5p MIMAT0019325 Ovis aries miR-3957-5p 12 80
ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746 12 80
ppy-miR-1468 MIMAT0016231 Pongo pygmaeus miR-1468 12 80
aly-miR859-5p MIMAT0017647 Arabidopsis lyrata miR859-5p 12 80
bhv1-miR-B6-3p MIMAT0013968 Bovine herpesvirus miR-B6-3p 12 80
eca-miR-1468 MIMAT0013197 Equus caballus miR-1468 12 80
bta-miR-1468 MIMAT0013592 Bos taurus miR-1468 12 80
bmo-miR-9b-3p MIMAT0015290 Bombyx mori miR-9b-3p 12 80
gga-miR-1713 MIMAT0007609 Gallus gallus miR-1713 12 80
gga-miR-1649-3p MIMAT0007527 Gallus gallus miR-1649-3p 12 80
cin-miR-281-5p MIMAT0015265 Ciona intestinalis miR-281-5p 12 80
pta-miR949 MIMAT0005009 Pinus taeda miR949 12 80
hsa-miR-1468-5p MIMAT0006789 Homo sapiens miR-1468-5p 12 80
>hsa-miR-5091 MIMAT0021083 Homo sapiens miR-5091
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctccgt 7
|||||||
Sbjct: 7 tctccgt 1
>osa-miR5075 MIMAT0020561 Oryza sativa miR5075
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctccgt 7
|||||||
Sbjct: 2 tctccgt 8
>rno-miR-802-3p MIMAT0017362 Rattus norvegicus miR-802-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctccgt 7
|||||||
Sbjct: 7 tctccgt 1
>mdv2-miR-M23-3p MIMAT0012542 Mareks disease miR-M23-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctccgt 7
|||||||
Sbjct: 2 tctccgt 8
>mmu-miR-802-3p MIMAT0017240 Mus musculus miR-802-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctccgt 7
|||||||
Sbjct: 7 tctccgt 1
>chi-miR-1468-5p MIMAT0035969 Capra hircus miR-1468-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>bdi-miR5174f MIMAT0035538 Brachypodium distachyon miR5174f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 2 ctccgt 7
>eca-miR-9167 MIMAT0034745 Equus caballus miR-9167
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctccg 6
||||||
Sbjct: 3 tctccg 8
>cfa-miR-1468 MIMAT0034423 Canis familiaris miR-1468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>mmu-miR-8112 MIMAT0031418 Mus musculus miR-8112
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctccg 6
||||||
Sbjct: 1 tctccg 6
>gga-miR-7474-5p MIMAT0029102 Gallus gallus miR-7474-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctccgt 7
||||||
Sbjct: 8 ctccgt 3
>mdo-miR-7317-5p MIMAT0028634 Monodelphis domestica miR-7317-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 3 ctccgt 8
>mml-miR-7187-5p MIMAT0028328 Macaca mulatta miR-7187-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 3 ctccgt 8
>ssc-miR-7142-5p MIMAT0028159 Sus scrofa miR-7142-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctccg 6
||||||
Sbjct: 3 tctccg 8
>sbi-miR6224c-5p MIMAT0026418 Sorghum bicolor miR6224c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>sbi-miR6224b-5p MIMAT0026416 Sorghum bicolor miR6224b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>sbi-miR6224a-5p MIMAT0026414 Sorghum bicolor miR6224a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>bma-miR-5856b MIMAT0026355 Brugia malayi miR-5856b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 3 ctccgt 8
>bta-miR-3957 MIMAT0025548 Bos taurus miR-3957
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctccg 6
||||||
Sbjct: 8 tctccg 3
>bta-miR-6518 MIMAT0025536 Bos taurus miR-6518
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctccgt 7
||||||
Sbjct: 8 ctccgt 3
>ssc-miR-1468 MIMAT0025386 Sus scrofa miR-1468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>pde-miR949b MIMAT0025341 Pinus densata miR949b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctccg 6
||||||
Sbjct: 1 tctccg 6
>mmu-miR-6416-5p MIMAT0025170 Mus musculus miR-6416-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>ggo-miR-3615 MIMAT0024281 Gorilla gorilla miR-3615
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctccg 6
||||||
Sbjct: 3 tctccg 8
>bdi-miR5174a MIMAT0020718 Brachypodium distachyon miR5174a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>rgl-miR5137 MIMAT0020648 Rehmannia glutinosa miR5137
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctccg 6
||||||
Sbjct: 8 tctccg 3
>dme-miR-4955-5p MIMAT0020171 Drosophila melanogaster
miR-4955-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctccg 6
||||||
Sbjct: 8 tctccg 3
>pma-miR-25b-5p MIMAT0019406 Petromyzon marinus miR-25b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctccg 6
||||||
Sbjct: 8 tctccg 3
>oar-miR-3957-5p MIMAT0019325 Ovis aries miR-3957-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctccg 6
||||||
Sbjct: 8 tctccg 3
>ame-miR-3746 MIMAT0018514 Apis mellifera miR-3746
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctccg 6
||||||
Sbjct: 8 tctccg 3
>ppy-miR-1468 MIMAT0016231 Pongo pygmaeus miR-1468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>aly-miR859-5p MIMAT0017647 Arabidopsis lyrata miR859-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctccg 6
||||||
Sbjct: 3 tctccg 8
>bhv1-miR-B6-3p MIMAT0013968 Bovine herpesvirus miR-B6-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctccg 6
||||||
Sbjct: 3 tctccg 8
>eca-miR-1468 MIMAT0013197 Equus caballus miR-1468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>bta-miR-1468 MIMAT0013592 Bos taurus miR-1468
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>bmo-miR-9b-3p MIMAT0015290 Bombyx mori miR-9b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctccgt 7
||||||
Sbjct: 6 ctccgt 1
>gga-miR-1713 MIMAT0007609 Gallus gallus miR-1713
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctccg 6
||||||
Sbjct: 8 tctccg 3
>gga-miR-1649-3p MIMAT0007527 Gallus gallus miR-1649-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
>cin-miR-281-5p MIMAT0015265 Ciona intestinalis miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctccg 6
||||||
Sbjct: 6 tctccg 1
>pta-miR949 MIMAT0005009 Pinus taeda miR949
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctccg 6
||||||
Sbjct: 1 tctccg 6
>hsa-miR-1468-5p MIMAT0006789 Homo sapiens miR-1468-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctccgt 7
||||||
Sbjct: 1 ctccgt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 54
Number of extensions: 49
Number of successful extensions: 41
Number of sequences better than 100.0: 41
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 41
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
