BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hiv1-miR-tar-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9220 MIMAT0034812 Eptesicus fuscus miR-9220 16 6.9
hiv1-miR-TAR-3p MIMAT0006017 Human immunodeficiency miR-TAR-3p 16 6.9
ggo-miR-518c-5p MIMAT0036421 Gorilla gorilla miR-518c-5p 14 27
chi-miR-330-5p MIMAT0036143 Capra hircus miR-330-5p 14 27
eca-miR-8984 MIMAT0034521 Equus caballus miR-8984 14 27
hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p 14 27
hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p 14 27
gga-miR-6675-3p MIMAT0025778 Gallus gallus miR-6675-3p 14 27
tcc-miR399f MIMAT0020440 Theobroma cacao miR399f 14 27
hsa-miR-4756-3p MIMAT0019900 Homo sapiens miR-4756-3p 14 27
tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p 14 27
ppy-miR-330-5p MIMAT0015833 Pongo pygmaeus miR-330-5p 14 27
bmo-miR-3223-3p MIMAT0015404 Bombyx mori miR-3223-3p 14 27
hsa-miR-3191-5p MIMAT0022732 Homo sapiens miR-3191-5p 14 27
eca-miR-330 MIMAT0013012 Equus caballus miR-330 14 27
cfa-miR-330 MIMAT0009893 Canis familiaris miR-330 14 27
mml-miR-330-5p MIMAT0006270 Macaca mulatta miR-330-5p 14 27
hsa-miR-518c-5p MIMAT0002847 Homo sapiens miR-518c-5p 14 27
hsa-miR-330-5p MIMAT0004693 Homo sapiens miR-330-5p 14 27
mmu-miR-330-5p MIMAT0004642 Mus musculus miR-330-5p 14 27
rno-miR-330-5p MIMAT0004641 Rattus norvegicus miR-330-5p 14 27
>efu-miR-9220 MIMAT0034812 Eptesicus fuscus miR-9220
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctctggc 8
||||||||
Sbjct: 1 tctctggc 8
>hiv1-miR-TAR-3p MIMAT0006017 Human immunodeficiency miR-TAR-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctctggc 8
||||||||
Sbjct: 1 tctctggc 8
>ggo-miR-518c-5p MIMAT0036421 Gorilla gorilla miR-518c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>chi-miR-330-5p MIMAT0036143 Capra hircus miR-330-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>eca-miR-8984 MIMAT0034521 Equus caballus miR-8984
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctctggc 8
|||||||
Sbjct: 1 ctctggc 7
>hsa-miR-6824-3p MIMAT0027549 Homo sapiens miR-6824-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>hsa-miR-6764-3p MIMAT0027429 Homo sapiens miR-6764-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>gga-miR-6675-3p MIMAT0025778 Gallus gallus miR-6675-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>tcc-miR399f MIMAT0020440 Theobroma cacao miR399f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctctggc 8
|||||||
Sbjct: 8 ctctggc 2
>hsa-miR-4756-3p MIMAT0019900 Homo sapiens miR-4756-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctctgg 7
|||||||
Sbjct: 7 tctctgg 1
>tca-miR-3834-3p MIMAT0018701 Tribolium castaneum miR-3834-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>ppy-miR-330-5p MIMAT0015833 Pongo pygmaeus miR-330-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>bmo-miR-3223-3p MIMAT0015404 Bombyx mori miR-3223-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 2 tctctgg 8
>hsa-miR-3191-5p MIMAT0022732 Homo sapiens miR-3191-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 2 tctctgg 8
>eca-miR-330 MIMAT0013012 Equus caballus miR-330
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>cfa-miR-330 MIMAT0009893 Canis familiaris miR-330
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>mml-miR-330-5p MIMAT0006270 Macaca mulatta miR-330-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>hsa-miR-518c-5p MIMAT0002847 Homo sapiens miR-518c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>hsa-miR-330-5p MIMAT0004693 Homo sapiens miR-330-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>mmu-miR-330-5p MIMAT0004642 Mus musculus miR-330-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
>rno-miR-330-5p MIMAT0004641 Rattus norvegicus miR-330-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctctgg 7
|||||||
Sbjct: 1 tctctgg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 171
Number of extensions: 148
Number of successful extensions: 118
Number of sequences better than 100.0: 21
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
