BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= jcv-miR-j1-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-9842-5p MIMAT0037060 Sus scrofa miR-9842-5p 14 20
nve-miR-9464 MIMAT0035429 Nematostella vectensis miR-9464 14 20
efu-miR-143 MIMAT0035123 Eptesicus fuscus miR-143 14 20
eca-miR-9105 MIMAT0034652 Equus caballus miR-9105 14 20
eca-miR-8941 MIMAT0034470 Equus caballus miR-8941 14 20
mmu-miR-7090-5p MIMAT0028086 Mus musculus miR-7090-5p 14 20
mmu-miR-7026-5p MIMAT0027956 Mus musculus miR-7026-5p 14 20
hsa-miR-6761-5p MIMAT0027422 Homo sapiens miR-6761-5p 14 20
bkv-miR-B1-5p MIMAT0009149 BK polyomavirus miR-B1-5p 14 20
jcv-miR-J1-5p MIMAT0009147 JC polyomavirus miR-J1-5p 14 20
cfa-miR-1837 MIMAT0006630 Canis familiaris miR-1837 14 20
gma-miR5780b MIMAT0036341 Glycine max miR5780b 12 80
chi-miR-3958-5p MIMAT0036205 Capra hircus miR-3958-5p 12 80
eca-miR-8908f MIMAT0034701 Equus caballus miR-8908f 12 80
eca-miR-9141 MIMAT0034693 Equus caballus miR-9141 12 80
eca-miR-9077 MIMAT0034622 Equus caballus miR-9077 12 80
eca-miR-9033 MIMAT0034575 Equus caballus miR-9033 12 80
cfa-miR-8908f MIMAT0034418 Canis familiaris miR-8908f 12 80
sma-miR-8440-5p MIMAT0033584 Schistosoma mansoni miR-8440-5p 12 80
ppe-miR8126-5p MIMAT0031538 Prunus persica miR8126-5p 12 80
ipu-miR-7558b MIMAT0029557 Ictalurus punctatus miR-7558b 12 80
ipu-miR-7558a MIMAT0029554 Ictalurus punctatus miR-7558a 12 80
oan-miR-7415-3p MIMAT0028979 Ornithorhynchus anatinus miR-7415-3p 12 80
mml-miR-7194-3p MIMAT0028349 Macaca mulatta miR-7194-3p 12 80
mml-miR-7191-3p MIMAT0028341 Macaca mulatta miR-7191-3p 12 80
mml-miR-7166-5p MIMAT0028266 Macaca mulatta miR-7166-5p 12 80
hsa-miR-7162-3p MIMAT0028235 Homo sapiens miR-7162-3p 12 80
ssc-miR-7136-3p MIMAT0028148 Sus scrofa miR-7136-3p 12 80
ssc-miR-7135-5p MIMAT0028145 Sus scrofa miR-7135-5p 12 80
mmu-miR-7050-3p MIMAT0028005 Mus musculus miR-7050-3p 12 80
mmu-miR-7035-3p MIMAT0027975 Mus musculus miR-7035-3p 12 80
mmu-miR-6945-3p MIMAT0027791 Mus musculus miR-6945-3p 12 80
hsa-miR-6787-3p MIMAT0027475 Homo sapiens miR-6787-3p 12 80
gga-miR-6677-3p MIMAT0025781 Gallus gallus miR-6677-3p 12 80
gga-miR-6673-3p MIMAT0025775 Gallus gallus miR-6673-3p 12 80
gga-miR-6634-5p MIMAT0025730 Gallus gallus miR-6634-5p 12 80
tgu-miR-1467-5p MIMAT0025399 Taeniopygia guttata miR-1467-5p 12 80
bmo-miR-6497-5p MIMAT0025321 Bombyx mori miR-6497-5p 12 80
rno-miR-1199-5p MIMAT0031125 Rattus norvegicus miR-1199-5p 12 80
mmu-miR-5615-3p MIMAT0022356 Mus musculus miR-5615-3p 12 80
osa-miR5527 MIMAT0022162 Oryza sativa miR5527 12 80
gma-miR5371-3p MIMAT0021609 Glycine max miR5371-3p 12 80
hsa-miR-4797-3p MIMAT0019973 Homo sapiens miR-4797-3p 12 80
hsa-miR-4682 MIMAT0019767 Homo sapiens miR-4682 12 80
hsa-miR-4653-5p MIMAT0019718 Homo sapiens miR-4653-5p 12 80
hsa-miR-4649-3p MIMAT0019712 Homo sapiens miR-4649-3p 12 80
hsa-miR-3921 MIMAT0018196 Homo sapiens miR-3921 12 80
hsa-miR-3664-3p MIMAT0019220 Homo sapiens miR-3664-3p 12 80
ssc-miR-4339 MIMAT0017980 Sus scrofa miR-4339 12 80
hsa-miR-4324 MIMAT0016876 Homo sapiens miR-4324 12 80
sja-miR-3483-5p MIMAT0016286 Schistosoma japonicum miR-3483-5p 12 80
aly-miR3448-3p MIMAT0017732 Arabidopsis lyrata miR3448-3p 12 80
hsa-miR-3200-5p MIMAT0017392 Homo sapiens miR-3200-5p 12 80
mmu-miR-3097-3p MIMAT0014916 Mus musculus miR-3097-3p 12 80
hvt-miR-H18-3p MIMAT0012875 Herpesvirus of miR-H18-3p 12 80
bta-miR-2376 MIMAT0011922 Bos taurus miR-2376 12 80
hsv2-miR-H2 MIMAT0010205 Herpes Simplex miR-H2 12 80
gga-miR-1746 MIMAT0007651 Gallus gallus miR-1746 12 80
gga-miR-1467-5p MIMAT0007345 Gallus gallus miR-1467-5p 12 80
mmu-miR-1199-5p MIMAT0005860 Mus musculus miR-1199-5p 12 80
rno-miR-883-5p MIMAT0017294 Rattus norvegicus miR-883-5p 12 80
rno-miR-880-5p MIMAT0017292 Rattus norvegicus miR-880-5p 12 80
pta-miR952b MIMAT0005014 Pinus taeda miR952b 12 80
cre-miR919.2 MIMAT0004399 Chlamydomonas reinhardtii miR919.2 12 80
ppt-miR899 MIMAT0004369 Physcomitrella patens miR899 12 80
mmu-miR-883b-5p MIMAT0004850 Mus musculus miR-883b-5p 12 80
mmu-miR-883a-5p MIMAT0004848 Mus musculus miR-883a-5p 12 80
mmu-miR-880-5p MIMAT0017266 Mus musculus miR-880-5p 12 80
mmu-miR-717 MIMAT0003510 Mus musculus miR-717 12 80
>ssc-miR-9842-5p MIMAT0037060 Sus scrofa miR-9842-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctgaga 7
|||||||
Sbjct: 7 tctgaga 1
>nve-miR-9464 MIMAT0035429 Nematostella vectensis miR-9464
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgaga 7
|||||||
Sbjct: 1 tctgaga 7
>efu-miR-143 MIMAT0035123 Eptesicus fuscus miR-143
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgaga 7
|||||||
Sbjct: 2 tctgaga 8
>eca-miR-9105 MIMAT0034652 Equus caballus miR-9105
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgaga 7
|||||||
Sbjct: 1 tctgaga 7
>eca-miR-8941 MIMAT0034470 Equus caballus miR-8941
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgaga 7
|||||||
Sbjct: 1 tctgaga 7
>mmu-miR-7090-5p MIMAT0028086 Mus musculus miR-7090-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctgaga 7
|||||||
Sbjct: 7 tctgaga 1
>mmu-miR-7026-5p MIMAT0027956 Mus musculus miR-7026-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgaga 7
|||||||
Sbjct: 2 tctgaga 8
>hsa-miR-6761-5p MIMAT0027422 Homo sapiens miR-6761-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgaga 7
|||||||
Sbjct: 1 tctgaga 7
>bkv-miR-B1-5p MIMAT0009149 BK polyomavirus miR-B1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgaga 7
|||||||
Sbjct: 2 tctgaga 8
>jcv-miR-J1-5p MIMAT0009147 JC polyomavirus miR-J1-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgaga 7
|||||||
Sbjct: 2 tctgaga 8
>cfa-miR-1837 MIMAT0006630 Canis familiaris miR-1837
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctgaga 7
|||||||
Sbjct: 7 tctgaga 1
>gma-miR5780b MIMAT0036341 Glycine max miR5780b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>chi-miR-3958-5p MIMAT0036205 Capra hircus miR-3958-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 3 tctgag 8
>eca-miR-8908f MIMAT0034701 Equus caballus miR-8908f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctgag 6
||||||
Sbjct: 8 tctgag 3
>eca-miR-9141 MIMAT0034693 Equus caballus miR-9141
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>eca-miR-9077 MIMAT0034622 Equus caballus miR-9077
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>eca-miR-9033 MIMAT0034575 Equus caballus miR-9033
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>cfa-miR-8908f MIMAT0034418 Canis familiaris miR-8908f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctgag 6
||||||
Sbjct: 8 tctgag 3
>sma-miR-8440-5p MIMAT0033584 Schistosoma mansoni miR-8440-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>ppe-miR8126-5p MIMAT0031538 Prunus persica miR8126-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>ipu-miR-7558b MIMAT0029557 Ictalurus punctatus miR-7558b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>ipu-miR-7558a MIMAT0029554 Ictalurus punctatus miR-7558a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>oan-miR-7415-3p MIMAT0028979 Ornithorhynchus anatinus
miR-7415-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 3 tctgag 8
>mml-miR-7194-3p MIMAT0028349 Macaca mulatta miR-7194-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctgag 6
||||||
Sbjct: 6 tctgag 1
>mml-miR-7191-3p MIMAT0028341 Macaca mulatta miR-7191-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 8 ctgaga 3
>mml-miR-7166-5p MIMAT0028266 Macaca mulatta miR-7166-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 7 ctgaga 2
>hsa-miR-7162-3p MIMAT0028235 Homo sapiens miR-7162-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>ssc-miR-7136-3p MIMAT0028148 Sus scrofa miR-7136-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 6 ctgaga 1
>ssc-miR-7135-5p MIMAT0028145 Sus scrofa miR-7135-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 3 tctgag 8
>mmu-miR-7050-3p MIMAT0028005 Mus musculus miR-7050-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 6 ctgaga 1
>mmu-miR-7035-3p MIMAT0027975 Mus musculus miR-7035-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>mmu-miR-6945-3p MIMAT0027791 Mus musculus miR-6945-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>hsa-miR-6787-3p MIMAT0027475 Homo sapiens miR-6787-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 6 ctgaga 1
>gga-miR-6677-3p MIMAT0025781 Gallus gallus miR-6677-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctgag 6
||||||
Sbjct: 8 tctgag 3
>gga-miR-6673-3p MIMAT0025775 Gallus gallus miR-6673-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>gga-miR-6634-5p MIMAT0025730 Gallus gallus miR-6634-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 6 ctgaga 1
>tgu-miR-1467-5p MIMAT0025399 Taeniopygia guttata miR-1467-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 7 ctgaga 2
>bmo-miR-6497-5p MIMAT0025321 Bombyx mori miR-6497-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 3 tctgag 8
>rno-miR-1199-5p MIMAT0031125 Rattus norvegicus miR-1199-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>mmu-miR-5615-3p MIMAT0022356 Mus musculus miR-5615-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 8 ctgaga 3
>osa-miR5527 MIMAT0022162 Oryza sativa miR5527
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 6 ctgaga 1
>gma-miR5371-3p MIMAT0021609 Glycine max miR5371-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 6 ctgaga 1
>hsa-miR-4797-3p MIMAT0019973 Homo sapiens miR-4797-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 6 ctgaga 1
>hsa-miR-4682 MIMAT0019767 Homo sapiens miR-4682
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>hsa-miR-4653-5p MIMAT0019718 Homo sapiens miR-4653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 3 tctgag 8
>hsa-miR-4649-3p MIMAT0019712 Homo sapiens miR-4649-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>hsa-miR-3921 MIMAT0018196 Homo sapiens miR-3921
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 3 tctgag 8
>hsa-miR-3664-3p MIMAT0019220 Homo sapiens miR-3664-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 6 ctgaga 1
>ssc-miR-4339 MIMAT0017980 Sus scrofa miR-4339
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 3 tctgag 8
>hsa-miR-4324 MIMAT0016876 Homo sapiens miR-4324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>sja-miR-3483-5p MIMAT0016286 Schistosoma japonicum miR-3483-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>aly-miR3448-3p MIMAT0017732 Arabidopsis lyrata miR3448-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>hsa-miR-3200-5p MIMAT0017392 Homo sapiens miR-3200-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 3 tctgag 8
>mmu-miR-3097-3p MIMAT0014916 Mus musculus miR-3097-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctgag 6
||||||
Sbjct: 6 tctgag 1
>hvt-miR-H18-3p MIMAT0012875 Herpesvirus of miR-H18-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 1 ctgaga 6
>bta-miR-2376 MIMAT0011922 Bos taurus miR-2376
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 3 tctgag 8
>hsv2-miR-H2 MIMAT0010205 Herpes Simplex miR-H2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>gga-miR-1746 MIMAT0007651 Gallus gallus miR-1746
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctgag 6
||||||
Sbjct: 6 tctgag 1
>gga-miR-1467-5p MIMAT0007345 Gallus gallus miR-1467-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 6 ctgaga 1
>mmu-miR-1199-5p MIMAT0005860 Mus musculus miR-1199-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctgag 6
||||||
Sbjct: 1 tctgag 6
>rno-miR-883-5p MIMAT0017294 Rattus norvegicus miR-883-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>rno-miR-880-5p MIMAT0017292 Rattus norvegicus miR-880-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctgag 6
||||||
Sbjct: 8 tctgag 3
>pta-miR952b MIMAT0005014 Pinus taeda miR952b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>cre-miR919.2 MIMAT0004399 Chlamydomonas reinhardtii miR919.2
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgaga 7
||||||
Sbjct: 6 ctgaga 1
>ppt-miR899 MIMAT0004369 Physcomitrella patens miR899
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>mmu-miR-883b-5p MIMAT0004850 Mus musculus miR-883b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>mmu-miR-883a-5p MIMAT0004848 Mus musculus miR-883a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgaga 7
||||||
Sbjct: 3 ctgaga 8
>mmu-miR-880-5p MIMAT0017266 Mus musculus miR-880-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctgag 6
||||||
Sbjct: 8 tctgag 3
>mmu-miR-717 MIMAT0003510 Mus musculus miR-717
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctgag 6
||||||
Sbjct: 6 tctgag 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 105
Number of extensions: 94
Number of successful extensions: 69
Number of sequences better than 100.0: 69
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 69
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
