BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b7-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
hbv-miR-B7-5p MIMAT0031766 Herpes B miR-B7-5p 14 20
mmu-miR-1231-5p MIMAT0022357 Mus musculus miR-1231-5p 14 20
hsa-miR-5189-5p MIMAT0021120 Homo sapiens miR-5189-5p 14 20
oar-miR-134-3p MIMAT0019309 Ovis aries miR-134-3p 14 20
pab-miR950-3p MIMAT0018124 Picea abies miR950-3p 14 20
ppy-miR-1285b MIMAT0016208 Pongo pygmaeus miR-1285b 14 20
bmo-miR-2751 MIMAT0012631 Bombyx mori miR-2751 14 20
ptr-miR-1285 MIMAT0008004 Pan troglodytes miR-1285 14 20
odi-miR-1476-5p MIMAT0006027 Oikopleura dioica miR-1476-5p 14 20
odi-miR-1475 MIMAT0006026 Oikopleura dioica miR-1475 14 20
hsa-miR-1285-3p MIMAT0005876 Homo sapiens miR-1285-3p 14 20
tch-miR-9770 MIMAT0036615 Tupaia chinensis miR-9770 12 80
tch-miR-326 MIMAT0036601 Tupaia chinensis miR-326 12 80
chi-miR-330-5p MIMAT0036143 Capra hircus miR-330-5p 12 80
chi-miR-326-3p MIMAT0036138 Capra hircus miR-326-3p 12 80
efu-miR-9360 MIMAT0035171 Eptesicus fuscus miR-9360 12 80
eca-miR-8908m MIMAT0034717 Equus caballus miR-8908m 12 80
eca-miR-8908k MIMAT0034694 Equus caballus miR-8908k 12 80
eca-miR-8968 MIMAT0034503 Equus caballus miR-8968 12 80
cfa-miR-8883 MIMAT0034385 Canis familiaris miR-8883 12 80
str-miR-5359-5p MIMAT0033352 Strongyloides ratti miR-5359-5p 12 80
ppc-miR-8263-3p MIMAT0033011 Pristionchus pacificus miR-8263-3p 12 80
ppc-miR-2237d-3p MIMAT0032998 Pristionchus pacificus miR-2237d-3p 12 80
ppc-miR-8224-3p MIMAT0032891 Pristionchus pacificus miR-8224-3p 12 80
ssa-miR-150-3p MIMAT0032384 Salmo salar miR-150-3p 12 80
mmu-miR-8108 MIMAT0031413 Mus musculus miR-8108 12 80
prd-miR-5359-5p MIMAT0030468 Panagrellus redivivus miR-5359-5p 12 80
prd-miR-86-3p MIMAT0030467 Panagrellus redivivus miR-86-3p 12 80
prd-miR-7866-5p MIMAT0030458 Panagrellus redivivus miR-7866-5p 12 80
mmu-miR-7684-5p MIMAT0029890 Mus musculus miR-7684-5p 12 80
ipu-miR-7567 MIMAT0029566 Ictalurus punctatus miR-7567 12 80
mdo-miR-1544e-5p MIMAT0031033 Monodelphis domestica miR-1544e-5p 12 80
mdo-miR-7276-3p MIMAT0028527 Monodelphis domestica miR-7276-3p 12 80
mmu-miR-7212-5p MIMAT0028392 Mus musculus miR-7212-5p 12 80
hsa-miR-7155-5p MIMAT0028220 Homo sapiens miR-7155-5p 12 80
mmu-miR-7117-5p MIMAT0028131 Mus musculus miR-7117-5p 12 80
mmu-miR-6998-5p MIMAT0027898 Mus musculus miR-6998-5p 12 80
hsa-miR-6840-3p MIMAT0027583 Homo sapiens miR-6840-3p 12 80
hsa-miR-6776-5p MIMAT0027452 Homo sapiens miR-6776-5p 12 80
hsa-miR-6724-5p MIMAT0025856 Homo sapiens miR-6724-5p 12 80
bta-miR-6523a MIMAT0025552 Bos taurus miR-6523a 12 80
pde-miR390 MIMAT0025331 Pinus densata miR390 12 80
mmu-miR-6356 MIMAT0025099 Mus musculus miR-6356 12 80
rno-miR-3075 MIMAT0025057 Rattus norvegicus miR-3075 12 80
mml-miR-1298-3p MIMAT0027109 Macaca mulatta miR-1298-3p 12 80
ggo-miR-488 MIMAT0024230 Gorilla gorilla miR-488 12 80
ggo-miR-326 MIMAT0024215 Gorilla gorilla miR-326 12 80
ptr-miR-3192 MIMAT0024042 Pan troglodytes miR-3192 12 80
cgr-miR-326 MIMAT0023913 Cricetulus griseus miR-326 12 80
hco-miR-5902-5p MIMAT0023352 Haemonchus contortus miR-5902-5p 12 80
hsa-miR-1295b-5p MIMAT0022293 Homo sapiens miR-1295b-5p 12 80
asu-miR-5359-5p MIMAT0021580 Ascaris suum miR-5359-5p 12 80
asu-miR-279a-5p MIMAT0021511 Ascaris suum miR-279a-5p 12 80
asu-miR-86-3p MIMAT0021480 Ascaris suum miR-86-3p 12 80
bfl-miR-4894 MIMAT0020485 Branchiostoma floridae miR-4894 12 80
hsa-miR-4700-5p MIMAT0019796 Homo sapiens miR-4700-5p 12 80
hsa-miR-4674 MIMAT0019756 Homo sapiens miR-4674 12 80
ssc-miR-4335 MIMAT0017968 Sus scrofa miR-4335 12 80
ppy-miR-1912 MIMAT0016240 Pongo pygmaeus miR-1912 12 80
ppy-miR-330-5p MIMAT0015833 Pongo pygmaeus miR-330-5p 12 80
ppy-miR-326 MIMAT0015830 Pongo pygmaeus miR-326 12 80
hsa-miR-3192-5p MIMAT0015076 Homo sapiens miR-3192-5p 12 80
mmu-miR-3075-5p MIMAT0014858 Mus musculus miR-3075-5p 12 80
ssc-miR-1285 MIMAT0013954 Sus scrofa miR-1285 12 80
eca-miR-1912 MIMAT0013201 Equus caballus miR-1912 12 80
eca-miR-330 MIMAT0013012 Equus caballus miR-330 12 80
eca-miR-326 MIMAT0012989 Equus caballus miR-326 12 80
bta-miR-2447 MIMAT0012024 Bos taurus miR-2447 12 80
bta-miR-2430 MIMAT0012000 Bos taurus miR-2430 12 80
bta-miR-2407 MIMAT0011965 Bos taurus miR-2407 12 80
bta-miR-2355-5p MIMAT0011891 Bos taurus miR-2355-5p 12 80
crm-miR-86-3p MIMAT0011586 Caenorhabditis remanei miR-86-3p 12 80
cfa-miR-488 MIMAT0009903 Canis familiaris miR-488 12 80
cfa-miR-326 MIMAT0009894 Canis familiaris miR-326 12 80
cfa-miR-330 MIMAT0009893 Canis familiaris miR-330 12 80
bta-miR-326 MIMAT0009286 Bos taurus miR-326 12 80
ptr-miR-326 MIMAT0008099 Pan troglodytes miR-326 12 80
hsa-miR-1912 MIMAT0007887 Homo sapiens miR-1912 12 80
osa-miR1851 MIMAT0007771 Oryza sativa miR1851 12 80
mml-miR-488-5p MIMAT0026882 Macaca mulatta miR-488-5p 12 80
mml-miR-330-5p MIMAT0006270 Macaca mulatta miR-330-5p 12 80
gga-miR-1683 MIMAT0007570 Gallus gallus miR-1683 12 80
gga-miR-1635 MIMAT0007508 Gallus gallus miR-1635 12 80
oan-miR-1365-5p MIMAT0007028 Ornithorhynchus anatinus miR-1365-5p 12 80
oan-miR-1338-3p MIMAT0006840 Ornithorhynchus anatinus miR-1338-3p 12 80
rno-miR-488-5p MIMAT0017320 Rattus norvegicus miR-488-5p 12 80
dme-miR-954-5p MIMAT0005465 Drosophila melanogaster miR-954-5p 12 80
pta-miR390 MIMAT0004998 Pinus taeda miR390 12 80
hsa-miR-939-3p MIMAT0022939 Homo sapiens miR-939-3p 12 80
mmu-miR-488-5p MIMAT0003449 Mus musculus miR-488-5p 12 80
mmu-miR-1298-3p MIMAT0014810 Mus musculus miR-1298-3p 12 80
hsa-miR-1298-3p MIMAT0026641 Homo sapiens miR-1298-3p 12 80
hsa-miR-488-5p MIMAT0002804 Homo sapiens miR-488-5p 12 80
ssc-miR-326 MIMAT0002140 Sus scrofa miR-326 12 80
hsa-miR-326 MIMAT0000756 Homo sapiens miR-326 12 80
hsa-miR-330-5p MIMAT0004693 Homo sapiens miR-330-5p 12 80
mmu-miR-330-5p MIMAT0004642 Mus musculus miR-330-5p 12 80
rno-miR-330-5p MIMAT0004641 Rattus norvegicus miR-330-5p 12 80
rno-miR-326-3p MIMAT0000560 Rattus norvegicus miR-326-3p 12 80
mmu-miR-326-3p MIMAT0000559 Mus musculus miR-326-3p 12 80
cel-miR-86-3p MIMAT0020776 Caenorhabditis elegans miR-86-3p 12 80
>hbv-miR-B7-5p MIMAT0031766 Herpes B miR-B7-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 2 tctgggc 8
>mmu-miR-1231-5p MIMAT0022357 Mus musculus miR-1231-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 1 tctgggc 7
>hsa-miR-5189-5p MIMAT0021120 Homo sapiens miR-5189-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 1 tctgggc 7
>oar-miR-134-3p MIMAT0019309 Ovis aries miR-134-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 1 tctgggc 7
>pab-miR950-3p MIMAT0018124 Picea abies miR950-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 1 tctgggc 7
>ppy-miR-1285b MIMAT0016208 Pongo pygmaeus miR-1285b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 1 tctgggc 7
>bmo-miR-2751 MIMAT0012631 Bombyx mori miR-2751
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 2 tctgggc 8
>ptr-miR-1285 MIMAT0008004 Pan troglodytes miR-1285
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 1 tctgggc 7
>odi-miR-1476-5p MIMAT0006027 Oikopleura dioica miR-1476-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 1 tctgggc 7
>odi-miR-1475 MIMAT0006026 Oikopleura dioica miR-1475
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 1 tctgggc 7
>hsa-miR-1285-3p MIMAT0005876 Homo sapiens miR-1285-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgggc 7
|||||||
Sbjct: 1 tctgggc 7
>tch-miR-9770 MIMAT0036615 Tupaia chinensis miR-9770
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>tch-miR-326 MIMAT0036601 Tupaia chinensis miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>chi-miR-330-5p MIMAT0036143 Capra hircus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>chi-miR-326-3p MIMAT0036138 Capra hircus miR-326-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>efu-miR-9360 MIMAT0035171 Eptesicus fuscus miR-9360
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>eca-miR-8908m MIMAT0034717 Equus caballus miR-8908m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgggc 7
||||||
Sbjct: 8 ctgggc 3
>eca-miR-8908k MIMAT0034694 Equus caballus miR-8908k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 8 tctggg 3
>eca-miR-8968 MIMAT0034503 Equus caballus miR-8968
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>cfa-miR-8883 MIMAT0034385 Canis familiaris miR-8883
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>str-miR-5359-5p MIMAT0033352 Strongyloides ratti miR-5359-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>ppc-miR-8263-3p MIMAT0033011 Pristionchus pacificus miR-8263-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>ppc-miR-2237d-3p MIMAT0032998 Pristionchus pacificus
miR-2237d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgggc 7
||||||
Sbjct: 8 ctgggc 3
>ppc-miR-8224-3p MIMAT0032891 Pristionchus pacificus miR-8224-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 3 ctgggc 8
>ssa-miR-150-3p MIMAT0032384 Salmo salar miR-150-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
>mmu-miR-8108 MIMAT0031413 Mus musculus miR-8108
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>prd-miR-5359-5p MIMAT0030468 Panagrellus redivivus miR-5359-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>prd-miR-86-3p MIMAT0030467 Panagrellus redivivus miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
>prd-miR-7866-5p MIMAT0030458 Panagrellus redivivus miR-7866-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>mmu-miR-7684-5p MIMAT0029890 Mus musculus miR-7684-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>ipu-miR-7567 MIMAT0029566 Ictalurus punctatus miR-7567
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgggc 7
||||||
Sbjct: 8 ctgggc 3
>mdo-miR-1544e-5p MIMAT0031033 Monodelphis domestica
miR-1544e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgggc 7
||||||
Sbjct: 8 ctgggc 3
>mdo-miR-7276-3p MIMAT0028527 Monodelphis domestica miR-7276-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgggc 7
||||||
Sbjct: 6 ctgggc 1
>mmu-miR-7212-5p MIMAT0028392 Mus musculus miR-7212-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>hsa-miR-7155-5p MIMAT0028220 Homo sapiens miR-7155-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>mmu-miR-7117-5p MIMAT0028131 Mus musculus miR-7117-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>mmu-miR-6998-5p MIMAT0027898 Mus musculus miR-6998-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
>hsa-miR-6840-3p MIMAT0027583 Homo sapiens miR-6840-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgggc 7
||||||
Sbjct: 6 ctgggc 1
>hsa-miR-6776-5p MIMAT0027452 Homo sapiens miR-6776-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>hsa-miR-6724-5p MIMAT0025856 Homo sapiens miR-6724-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
>bta-miR-6523a MIMAT0025552 Bos taurus miR-6523a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>pde-miR390 MIMAT0025331 Pinus densata miR390
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgggc 7
||||||
Sbjct: 8 ctgggc 3
>mmu-miR-6356 MIMAT0025099 Mus musculus miR-6356
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 8 tctggg 3
>rno-miR-3075 MIMAT0025057 Rattus norvegicus miR-3075
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>mml-miR-1298-3p MIMAT0027109 Macaca mulatta miR-1298-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>ggo-miR-488 MIMAT0024230 Gorilla gorilla miR-488
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 6 tctggg 1
>ggo-miR-326 MIMAT0024215 Gorilla gorilla miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>ptr-miR-3192 MIMAT0024042 Pan troglodytes miR-3192
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>cgr-miR-326 MIMAT0023913 Cricetulus griseus miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>hco-miR-5902-5p MIMAT0023352 Haemonchus contortus miR-5902-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>hsa-miR-1295b-5p MIMAT0022293 Homo sapiens miR-1295b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 8 tctggg 3
>asu-miR-5359-5p MIMAT0021580 Ascaris suum miR-5359-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>asu-miR-279a-5p MIMAT0021511 Ascaris suum miR-279a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
>asu-miR-86-3p MIMAT0021480 Ascaris suum miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
>bfl-miR-4894 MIMAT0020485 Branchiostoma floridae miR-4894
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>hsa-miR-4700-5p MIMAT0019796 Homo sapiens miR-4700-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>hsa-miR-4674 MIMAT0019756 Homo sapiens miR-4674
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
>ssc-miR-4335 MIMAT0017968 Sus scrofa miR-4335
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgggc 7
||||||
Sbjct: 8 ctgggc 3
>ppy-miR-1912 MIMAT0016240 Pongo pygmaeus miR-1912
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 8 tctggg 3
>ppy-miR-330-5p MIMAT0015833 Pongo pygmaeus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>ppy-miR-326 MIMAT0015830 Pongo pygmaeus miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>hsa-miR-3192-5p MIMAT0015076 Homo sapiens miR-3192-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>mmu-miR-3075-5p MIMAT0014858 Mus musculus miR-3075-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>ssc-miR-1285 MIMAT0013954 Sus scrofa miR-1285
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
>eca-miR-1912 MIMAT0013201 Equus caballus miR-1912
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 8 tctggg 3
>eca-miR-330 MIMAT0013012 Equus caballus miR-330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>eca-miR-326 MIMAT0012989 Equus caballus miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>bta-miR-2447 MIMAT0012024 Bos taurus miR-2447
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>bta-miR-2430 MIMAT0012000 Bos taurus miR-2430
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>bta-miR-2407 MIMAT0011965 Bos taurus miR-2407
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
>bta-miR-2355-5p MIMAT0011891 Bos taurus miR-2355-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 6 tctggg 1
>crm-miR-86-3p MIMAT0011586 Caenorhabditis remanei miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
>cfa-miR-488 MIMAT0009903 Canis familiaris miR-488
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 6 tctggg 1
>cfa-miR-326 MIMAT0009894 Canis familiaris miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>cfa-miR-330 MIMAT0009893 Canis familiaris miR-330
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>bta-miR-326 MIMAT0009286 Bos taurus miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>ptr-miR-326 MIMAT0008099 Pan troglodytes miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>hsa-miR-1912 MIMAT0007887 Homo sapiens miR-1912
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 8 tctggg 3
>osa-miR1851 MIMAT0007771 Oryza sativa miR1851
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>mml-miR-488-5p MIMAT0026882 Macaca mulatta miR-488-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 6 tctggg 1
>mml-miR-330-5p MIMAT0006270 Macaca mulatta miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>gga-miR-1683 MIMAT0007570 Gallus gallus miR-1683
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>gga-miR-1635 MIMAT0007508 Gallus gallus miR-1635
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgggc 7
||||||
Sbjct: 7 ctgggc 2
>oan-miR-1365-5p MIMAT0007028 Ornithorhynchus anatinus
miR-1365-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 3 ctgggc 8
>oan-miR-1338-3p MIMAT0006840 Ornithorhynchus anatinus
miR-1338-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 3 ctgggc 8
>rno-miR-488-5p MIMAT0017320 Rattus norvegicus miR-488-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 6 tctggg 1
>dme-miR-954-5p MIMAT0005465 Drosophila melanogaster miR-954-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 1 tctggg 6
>pta-miR390 MIMAT0004998 Pinus taeda miR390
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 ctgggc 7
||||||
Sbjct: 8 ctgggc 3
>hsa-miR-939-3p MIMAT0022939 Homo sapiens miR-939-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 3 ctgggc 8
>mmu-miR-488-5p MIMAT0003449 Mus musculus miR-488-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 6 tctggg 1
>mmu-miR-1298-3p MIMAT0014810 Mus musculus miR-1298-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>hsa-miR-1298-3p MIMAT0026641 Homo sapiens miR-1298-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>hsa-miR-488-5p MIMAT0002804 Homo sapiens miR-488-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tctggg 6
||||||
Sbjct: 6 tctggg 1
>ssc-miR-326 MIMAT0002140 Sus scrofa miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>hsa-miR-326 MIMAT0000756 Homo sapiens miR-326
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>hsa-miR-330-5p MIMAT0004693 Homo sapiens miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>mmu-miR-330-5p MIMAT0004642 Mus musculus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>rno-miR-330-5p MIMAT0004641 Rattus norvegicus miR-330-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>rno-miR-326-3p MIMAT0000560 Rattus norvegicus miR-326-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>mmu-miR-326-3p MIMAT0000559 Mus musculus miR-326-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tctggg 6
||||||
Sbjct: 3 tctggg 8
>cel-miR-86-3p MIMAT0020776 Caenorhabditis elegans miR-86-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 ctgggc 7
||||||
Sbjct: 1 ctgggc 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 137
Number of extensions: 126
Number of successful extensions: 101
Number of sequences better than 100.0: 101
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 101
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
