BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hbv-miR-b7-5p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pab-miR950-3p MIMAT0018124 Picea abies miR950-3p                       16   6.9  
hbv-miR-B7-5p MIMAT0031766 Herpes B miR-B7-5p                          14      27
hsa-miR-6724-5p MIMAT0025856 Homo sapiens miR-6724-5p                  14      27
mmu-miR-1231-5p MIMAT0022357 Mus musculus miR-1231-5p                  14      27
hsa-miR-5189-5p MIMAT0021120 Homo sapiens miR-5189-5p                  14      27
oar-miR-134-3p MIMAT0019309 Ovis aries miR-134-3p                      14      27
ppy-miR-1285b MIMAT0016208 Pongo pygmaeus miR-1285b                    14      27
bmo-miR-2751 MIMAT0012631 Bombyx mori miR-2751                         14      27
ptr-miR-1285 MIMAT0008004 Pan troglodytes miR-1285                     14      27
odi-miR-1476-5p MIMAT0006027 Oikopleura dioica miR-1476-5p             14      27
odi-miR-1475 MIMAT0006026 Oikopleura dioica miR-1475                   14      27
hsa-miR-1285-3p MIMAT0005876 Homo sapiens miR-1285-3p                  14      27
>pab-miR950-3p MIMAT0018124 Picea abies miR950-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tctgggcc 8
         ||||||||
Sbjct: 1 tctgggcc 8
>hbv-miR-B7-5p MIMAT0031766 Herpes B miR-B7-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgggc 7
         |||||||
Sbjct: 2 tctgggc 8
>hsa-miR-6724-5p MIMAT0025856 Homo sapiens miR-6724-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgggcc 8
         |||||||
Sbjct: 1 ctgggcc 7
>mmu-miR-1231-5p MIMAT0022357 Mus musculus miR-1231-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgggc 7
         |||||||
Sbjct: 1 tctgggc 7
>hsa-miR-5189-5p MIMAT0021120 Homo sapiens miR-5189-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgggc 7
         |||||||
Sbjct: 1 tctgggc 7
>oar-miR-134-3p MIMAT0019309 Ovis aries miR-134-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgggc 7
         |||||||
Sbjct: 1 tctgggc 7
>ppy-miR-1285b MIMAT0016208 Pongo pygmaeus miR-1285b
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgggc 7
         |||||||
Sbjct: 1 tctgggc 7
>bmo-miR-2751 MIMAT0012631 Bombyx mori miR-2751
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgggc 7
         |||||||
Sbjct: 2 tctgggc 8
>ptr-miR-1285 MIMAT0008004 Pan troglodytes miR-1285
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgggc 7
         |||||||
Sbjct: 1 tctgggc 7
>odi-miR-1476-5p MIMAT0006027 Oikopleura dioica miR-1476-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgggc 7
         |||||||
Sbjct: 1 tctgggc 7
>odi-miR-1475 MIMAT0006026 Oikopleura dioica miR-1475
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgggc 7
         |||||||
Sbjct: 1 tctgggc 7
>hsa-miR-1285-3p MIMAT0005876 Homo sapiens miR-1285-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgggc 7
         |||||||
Sbjct: 1 tctgggc 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 181
Number of extensions: 168
Number of successful extensions: 134
Number of sequences better than 100.0: 12
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 12
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)