BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ohv2-miR-3
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gsa-miR-993-5p MIMAT0035304 Gyrodactylus salaris miR-993-5p 14 27
mml-miR-7207-3p MIMAT0028381 Macaca mulatta miR-7207-3p 14 27
hsa-miR-4742-3p MIMAT0019873 Homo sapiens miR-4742-3p 14 27
sme-miR-2205-3p MIMAT0011409 Schmidtea mediterranea miR-2205-3p 14 27
oan-miR-1390-5p MIMAT0007176 Ornithorhynchus anatinus miR-1390-5p 14 27
mmu-miR-466g MIMAT0004883 Mus musculus miR-466g 14 27
>gsa-miR-993-5p MIMAT0035304 Gyrodactylus salaris miR-993-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgtat 7
|||||||
Sbjct: 2 tctgtat 8
>mml-miR-7207-3p MIMAT0028381 Macaca mulatta miR-7207-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgtat 7
|||||||
Sbjct: 2 tctgtat 8
>hsa-miR-4742-3p MIMAT0019873 Homo sapiens miR-4742-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgtat 7
|||||||
Sbjct: 1 tctgtat 7
>sme-miR-2205-3p MIMAT0011409 Schmidtea mediterranea miR-2205-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgtat 7
|||||||
Sbjct: 1 tctgtat 7
>oan-miR-1390-5p MIMAT0007176 Ornithorhynchus anatinus
miR-1390-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctgtat 7
|||||||
Sbjct: 8 tctgtat 2
>mmu-miR-466g MIMAT0004883 Mus musculus miR-466g
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctgtat 7
|||||||
Sbjct: 7 tctgtat 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 104
Number of extensions: 98
Number of successful extensions: 82
Number of sequences better than 100.0: 6
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 6
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)