BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hsv1-miR-h14-3p
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hsa-miR-6889-3p MIMAT0027679 Homo sapiens miR-6889-3p                  16   6.9  
hsv1-miR-H14-3p MIMAT0014692 Herpes Simplex miR-H14-3p                 16   6.9  
ata-miR528-3p MIMAT0037193 Aegilops tauschii miR528-3p                 14      27
mmu-miR-9769-5p MIMAT0036461 Mus musculus miR-9769-5p                  14      27
chi-miR-197-5p MIMAT0036034 Capra hircus miR-197-5p                    14      27
eca-miR-6529 MIMAT0034760 Equus caballus miR-6529                      14      27
cfa-miR-8885 MIMAT0034389 Canis familiaris miR-8885                    14      27
cfa-miR-6529 MIMAT0034278 Canis familiaris miR-6529                    14      27
prd-miR-7969-5p MIMAT0030840 Panagrellus redivivus miR-7969-5p         14      27
oan-miR-7413-5p MIMAT0028974 Ornithorhynchus anatinus miR-7413-5p      14      27
mdo-miR-7388c-5p MIMAT0028874 Monodelphis domestica miR-7388c-5p       14      27
mml-miR-6529-3p MIMAT0028315 Macaca mulatta miR-6529-3p                14      27
hsa-miR-7157-3p MIMAT0028225 Homo sapiens miR-7157-3p                  14      27
mmu-miR-7043-3p MIMAT0027991 Mus musculus miR-7043-3p                  14      27
mmu-miR-7015-5p MIMAT0027934 Mus musculus miR-7015-5p                  14      27
mmu-miR-7005-3p MIMAT0027915 Mus musculus miR-7005-3p                  14      27
mmu-miR-6965-3p MIMAT0027831 Mus musculus miR-6965-3p                  14      27
hsa-miR-6737-3p MIMAT0027376 Homo sapiens miR-6737-3p                  14      27
gga-miR-6565-3p MIMAT0025636 Gallus gallus miR-6565-3p                 14      27
hvsa-miR-HSUR2-5p MIMAT0022686 Herpesvirus saimiri miR-HSUR2-5p        14      27
isc-miR-5308 MIMAT0021378 Ixodes scapularis miR-5308                   14      27
bdi-miR528-3p MIMAT0027045 Brachypodium distachyon miR528-3p           14      27
ssc-miR-2320-5p MIMAT0020597 Sus scrofa miR-2320-5p                    14      27
zma-miR528b-3p MIMAT0015363 Zea mays miR528b-3p                        14      27
zma-miR528a-3p MIMAT0015362 Zea mays miR528a-3p                        14      27
bta-miR-2455 MIMAT0012037 Bos taurus miR-2455                          14      27
bta-miR-2320-5p MIMAT0011844 Bos taurus miR-2320-5p                    14      27
cel-miR-785-5p MIMAT0032015 Caenorhabditis elegans miR-785-5p          14      27
>hsa-miR-6889-3p MIMAT0027679 Homo sapiens miR-6889-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tctgtgcc 8
         ||||||||
Sbjct: 1 tctgtgcc 8
>hsv1-miR-H14-3p MIMAT0014692 Herpes Simplex miR-H14-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tctgtgcc 8
         ||||||||
Sbjct: 1 tctgtgcc 8
>ata-miR528-3p MIMAT0037193 Aegilops tauschii miR528-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 2 ctgtgcc 8
>mmu-miR-9769-5p MIMAT0036461 Mus musculus miR-9769-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 8 ctgtgcc 2
>chi-miR-197-5p MIMAT0036034 Capra hircus miR-197-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 1 tctgtgc 7
>eca-miR-6529 MIMAT0034760 Equus caballus miR-6529
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 2 ctgtgcc 8
>cfa-miR-8885 MIMAT0034389 Canis familiaris miR-8885
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 1 tctgtgc 7
>cfa-miR-6529 MIMAT0034278 Canis familiaris miR-6529
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 2 ctgtgcc 8
>prd-miR-7969-5p MIMAT0030840 Panagrellus redivivus miR-7969-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 1 ctgtgcc 7
>oan-miR-7413-5p MIMAT0028974 Ornithorhynchus anatinus
         miR-7413-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 8 ctgtgcc 2
>mdo-miR-7388c-5p MIMAT0028874 Monodelphis domestica
         miR-7388c-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 8 tctgtgc 2
>mml-miR-6529-3p MIMAT0028315 Macaca mulatta miR-6529-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 2 ctgtgcc 8
>hsa-miR-7157-3p MIMAT0028225 Homo sapiens miR-7157-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 1 tctgtgc 7
>mmu-miR-7043-3p MIMAT0027991 Mus musculus miR-7043-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 2 ctgtgcc 8
>mmu-miR-7015-5p MIMAT0027934 Mus musculus miR-7015-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 1 tctgtgc 7
>mmu-miR-7005-3p MIMAT0027915 Mus musculus miR-7005-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 1 ctgtgcc 7
>mmu-miR-6965-3p MIMAT0027831 Mus musculus miR-6965-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 1 tctgtgc 7
>hsa-miR-6737-3p MIMAT0027376 Homo sapiens miR-6737-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 1 tctgtgc 7
>gga-miR-6565-3p MIMAT0025636 Gallus gallus miR-6565-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 1 tctgtgc 7
>hvsa-miR-HSUR2-5p MIMAT0022686 Herpesvirus saimiri miR-HSUR2-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 1 tctgtgc 7
>isc-miR-5308 MIMAT0021378 Ixodes scapularis miR-5308
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 1 tctgtgc 7
>bdi-miR528-3p MIMAT0027045 Brachypodium distachyon miR528-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 2 ctgtgcc 8
>ssc-miR-2320-5p MIMAT0020597 Sus scrofa miR-2320-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 8 ctgtgcc 2
>zma-miR528b-3p MIMAT0015363 Zea mays miR528b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 2 ctgtgcc 8
>zma-miR528a-3p MIMAT0015362 Zea mays miR528a-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 2 ctgtgcc 8
>bta-miR-2455 MIMAT0012037 Bos taurus miR-2455
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 1 tctgtgc 7
>bta-miR-2320-5p MIMAT0011844 Bos taurus miR-2320-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 ctgtgcc 8
         |||||||
Sbjct: 8 ctgtgcc 2
>cel-miR-785-5p MIMAT0032015 Caenorhabditis elegans miR-785-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tctgtgc 7
         |||||||
Sbjct: 8 tctgtgc 2
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 216
Number of extensions: 186
Number of successful extensions: 156
Number of sequences better than 100.0: 28
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 28
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)