BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hvsa-miR-hsur2-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
chi-miR-197-5p MIMAT0036034 Capra hircus miR-197-5p 16 6.9
cfa-miR-8885 MIMAT0034389 Canis familiaris miR-8885 16 6.9
hsa-miR-7157-3p MIMAT0028225 Homo sapiens miR-7157-3p 16 6.9
mmu-miR-6965-3p MIMAT0027831 Mus musculus miR-6965-3p 16 6.9
hsa-miR-6737-3p MIMAT0027376 Homo sapiens miR-6737-3p 16 6.9
gga-miR-6565-3p MIMAT0025636 Gallus gallus miR-6565-3p 16 6.9
hvsa-miR-HSUR2-5p MIMAT0022686 Herpesvirus saimiri miR-HSUR2-5p 16 6.9
isc-miR-5308 MIMAT0021378 Ixodes scapularis miR-5308 16 6.9
bta-miR-2455 MIMAT0012037 Bos taurus miR-2455 16 6.9
cel-miR-785-5p MIMAT0032015 Caenorhabditis elegans miR-785-5p 16 6.9
bbe-miR-31-3p MIMAT0031667 Branchiostoma belcheri miR-31-3p 14 27
mdo-miR-7388c-5p MIMAT0028874 Monodelphis domestica miR-7388c-5p 14 27
mmu-miR-7015-5p MIMAT0027934 Mus musculus miR-7015-5p 14 27
hsa-miR-6889-3p MIMAT0027679 Homo sapiens miR-6889-3p 14 27
ame-miR-6047b MIMAT0023688 Apis mellifera miR-6047b 14 27
mmu-miR-5104 MIMAT0020611 Mus musculus miR-5104 14 27
hsa-miR-5008-3p MIMAT0021040 Homo sapiens miR-5008-3p 14 27
dme-miR-4908-3p MIMAT0020514 Drosophila melanogaster miR-4908-3p 14 27
hsv1-miR-H14-3p MIMAT0014692 Herpes Simplex miR-H14-3p 14 27
bfl-miR-31-3p MIMAT0019141 Branchiostoma floridae miR-31-3p 14 27
gga-miR-1695 MIMAT0007587 Gallus gallus miR-1695 14 27
osa-miR528-3p MIMAT0022926 Oryza sativa miR528-3p 14 27
>chi-miR-197-5p MIMAT0036034 Capra hircus miR-197-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgtgct 8
||||||||
Sbjct: 1 tctgtgct 8
>cfa-miR-8885 MIMAT0034389 Canis familiaris miR-8885
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgtgct 8
||||||||
Sbjct: 1 tctgtgct 8
>hsa-miR-7157-3p MIMAT0028225 Homo sapiens miR-7157-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgtgct 8
||||||||
Sbjct: 1 tctgtgct 8
>mmu-miR-6965-3p MIMAT0027831 Mus musculus miR-6965-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgtgct 8
||||||||
Sbjct: 1 tctgtgct 8
>hsa-miR-6737-3p MIMAT0027376 Homo sapiens miR-6737-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgtgct 8
||||||||
Sbjct: 1 tctgtgct 8
>gga-miR-6565-3p MIMAT0025636 Gallus gallus miR-6565-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgtgct 8
||||||||
Sbjct: 1 tctgtgct 8
>hvsa-miR-HSUR2-5p MIMAT0022686 Herpesvirus saimiri miR-HSUR2-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgtgct 8
||||||||
Sbjct: 1 tctgtgct 8
>isc-miR-5308 MIMAT0021378 Ixodes scapularis miR-5308
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgtgct 8
||||||||
Sbjct: 1 tctgtgct 8
>bta-miR-2455 MIMAT0012037 Bos taurus miR-2455
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgtgct 8
||||||||
Sbjct: 1 tctgtgct 8
>cel-miR-785-5p MIMAT0032015 Caenorhabditis elegans miR-785-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tctgtgct 8
||||||||
Sbjct: 8 tctgtgct 1
>bbe-miR-31-3p MIMAT0031667 Branchiostoma belcheri miR-31-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgtgct 8
|||||||
Sbjct: 2 ctgtgct 8
>mdo-miR-7388c-5p MIMAT0028874 Monodelphis domestica
miR-7388c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctgtgc 7
|||||||
Sbjct: 8 tctgtgc 2
>mmu-miR-7015-5p MIMAT0027934 Mus musculus miR-7015-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgtgc 7
|||||||
Sbjct: 1 tctgtgc 7
>hsa-miR-6889-3p MIMAT0027679 Homo sapiens miR-6889-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgtgc 7
|||||||
Sbjct: 1 tctgtgc 7
>ame-miR-6047b MIMAT0023688 Apis mellifera miR-6047b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgtgct 8
|||||||
Sbjct: 7 ctgtgct 1
>mmu-miR-5104 MIMAT0020611 Mus musculus miR-5104
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgtgct 8
|||||||
Sbjct: 1 ctgtgct 7
>hsa-miR-5008-3p MIMAT0021040 Homo sapiens miR-5008-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgtgct 8
|||||||
Sbjct: 2 ctgtgct 8
>dme-miR-4908-3p MIMAT0020514 Drosophila melanogaster
miR-4908-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgtgct 8
|||||||
Sbjct: 1 ctgtgct 7
>hsv1-miR-H14-3p MIMAT0014692 Herpes Simplex miR-H14-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgtgc 7
|||||||
Sbjct: 1 tctgtgc 7
>bfl-miR-31-3p MIMAT0019141 Branchiostoma floridae miR-31-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgtgct 8
|||||||
Sbjct: 1 ctgtgct 7
>gga-miR-1695 MIMAT0007587 Gallus gallus miR-1695
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgtgct 8
|||||||
Sbjct: 8 ctgtgct 2
>osa-miR528-3p MIMAT0022926 Oryza sativa miR528-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgtgct 8
|||||||
Sbjct: 2 ctgtgct 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 232
Number of extensions: 200
Number of successful extensions: 171
Number of sequences better than 100.0: 22
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
