BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR66
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
efu-miR-9293 MIMAT0034953 Eptesicus fuscus miR-9293 16 6.9
mdo-miR-7333-3p MIMAT0028675 Monodelphis domestica miR-7333-3p 16 6.9
ocu-miR-367-5p MIMAT0036324 Oryctolagus cuniculus miR-367-5p 14 27
efu-miR-9217 MIMAT0034809 Eptesicus fuscus miR-9217 14 27
bbe-miR-2067-5p MIMAT0031631 Branchiostoma belcheri miR-2067-5p 14 27
prd-miR-7893-5p MIMAT0030570 Panagrellus redivivus miR-7893-5p 14 27
cgr-miR-744-3p MIMAT0024003 Cricetulus griseus miR-744-3p 14 27
cin-miR-4001c-3p MIMAT0016451 Ciona intestinalis miR-4001c-3p 14 27
ppy-miR-1267 MIMAT0016191 Pongo pygmaeus miR-1267 14 27
hma-miR-3014 MIMAT0014683 Hydra magnipapillata miR-3014 14 27
cfa-miR-367 MIMAT0009859 Canis familiaris miR-367 14 27
gga-miR-1752 MIMAT0007659 Gallus gallus miR-1752 14 27
gga-miR-1644 MIMAT0007520 Gallus gallus miR-1644 14 27
oan-miR-1396 MIMAT0007198 Ornithorhynchus anatinus miR-1396 14 27
hsa-miR-744-3p MIMAT0004946 Homo sapiens miR-744-3p 14 27
mdv1-miR-M6-5p MIMAT0005803 Mareks disease miR-M6-5p 14 27
mmu-miR-744-3p MIMAT0004820 Mus musculus miR-744-3p 14 27
mmu-miR-367-5p MIMAT0017214 Mus musculus miR-367-5p 14 27
hsa-miR-367-5p MIMAT0004686 Homo sapiens miR-367-5p 14 27
>efu-miR-9293 MIMAT0034953 Eptesicus fuscus miR-9293
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tctgttgc 8
||||||||
Sbjct: 8 tctgttgc 1
>mdo-miR-7333-3p MIMAT0028675 Monodelphis domestica miR-7333-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgttgc 8
||||||||
Sbjct: 1 tctgttgc 8
>ocu-miR-367-5p MIMAT0036324 Oryctolagus cuniculus miR-367-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 2 ctgttgc 8
>efu-miR-9217 MIMAT0034809 Eptesicus fuscus miR-9217
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 2 ctgttgc 8
>bbe-miR-2067-5p MIMAT0031631 Branchiostoma belcheri miR-2067-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 2 ctgttgc 8
>prd-miR-7893-5p MIMAT0030570 Panagrellus redivivus miR-7893-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 1 ctgttgc 7
>cgr-miR-744-3p MIMAT0024003 Cricetulus griseus miR-744-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 1 ctgttgc 7
>cin-miR-4001c-3p MIMAT0016451 Ciona intestinalis miR-4001c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 2 ctgttgc 8
>ppy-miR-1267 MIMAT0016191 Pongo pygmaeus miR-1267
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgttg 7
|||||||
Sbjct: 1 tctgttg 7
>hma-miR-3014 MIMAT0014683 Hydra magnipapillata miR-3014
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctgttg 7
|||||||
Sbjct: 8 tctgttg 2
>cfa-miR-367 MIMAT0009859 Canis familiaris miR-367
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 2 ctgttgc 8
>gga-miR-1752 MIMAT0007659 Gallus gallus miR-1752
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgttg 7
|||||||
Sbjct: 2 tctgttg 8
>gga-miR-1644 MIMAT0007520 Gallus gallus miR-1644
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgttg 7
|||||||
Sbjct: 1 tctgttg 7
>oan-miR-1396 MIMAT0007198 Ornithorhynchus anatinus miR-1396
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgttg 7
|||||||
Sbjct: 1 tctgttg 7
>hsa-miR-744-3p MIMAT0004946 Homo sapiens miR-744-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 1 ctgttgc 7
>mdv1-miR-M6-5p MIMAT0005803 Mareks disease miR-M6-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgttg 7
|||||||
Sbjct: 1 tctgttg 7
>mmu-miR-744-3p MIMAT0004820 Mus musculus miR-744-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 1 ctgttgc 7
>mmu-miR-367-5p MIMAT0017214 Mus musculus miR-367-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 2 ctgttgc 8
>hsa-miR-367-5p MIMAT0004686 Homo sapiens miR-367-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgc 8
|||||||
Sbjct: 2 ctgttgc 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 187
Number of extensions: 166
Number of successful extensions: 141
Number of sequences better than 100.0: 19
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 19
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
