BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m6-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-1644 MIMAT0007520 Gallus gallus miR-1644 16 6.9
mdv1-miR-M6-5p MIMAT0005803 Mareks disease miR-M6-5p 16 6.9
ssc-miR-9807-5p MIMAT0037025 Sus scrofa miR-9807-5p 14 27
oha-miR-21-3p MIMAT0036825 Ophiophagus hannah miR-21-3p 14 27
efu-miR-9293 MIMAT0034953 Eptesicus fuscus miR-9293 14 27
mdo-miR-7333-3p MIMAT0028675 Monodelphis domestica miR-7333-3p 14 27
gga-miR-6548-5p MIMAT0025601 Gallus gallus miR-6548-5p 14 27
hme-miR-3327 MIMAT0024981 Heliconius melpomene miR-3327 14 27
hsa-miR-4709-5p MIMAT0019811 Homo sapiens miR-4709-5p 14 27
cin-miR-4001f-3p MIMAT0016457 Ciona intestinalis miR-4001f-3p 14 27
ppy-miR-1267 MIMAT0016191 Pongo pygmaeus miR-1267 14 27
bmo-miR-3327-5p MIMAT0015514 Bombyx mori miR-3327-5p 14 27
hma-miR-3014 MIMAT0014683 Hydra magnipapillata miR-3014 14 27
tgu-miR-21-3p MIMAT0014636 Taeniopygia guttata miR-21-3p 14 27
mtr-miR2592s-5p MIMAT0026925 Medicago truncatula miR2592s-5p 14 27
mtr-miR2592b-5p MIMAT0026924 Medicago truncatula miR2592b-5p 14 27
gga-miR-1752 MIMAT0007659 Gallus gallus miR-1752 14 27
oan-miR-1396 MIMAT0007198 Ornithorhynchus anatinus miR-1396 14 27
>gga-miR-1644 MIMAT0007520 Gallus gallus miR-1644
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgttgt 8
||||||||
Sbjct: 1 tctgttgt 8
>mdv1-miR-M6-5p MIMAT0005803 Mareks disease miR-M6-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tctgttgt 8
||||||||
Sbjct: 1 tctgttgt 8
>ssc-miR-9807-5p MIMAT0037025 Sus scrofa miR-9807-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgt 8
|||||||
Sbjct: 2 ctgttgt 8
>oha-miR-21-3p MIMAT0036825 Ophiophagus hannah miR-21-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgttgt 8
|||||||
Sbjct: 8 ctgttgt 2
>efu-miR-9293 MIMAT0034953 Eptesicus fuscus miR-9293
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctgttg 7
|||||||
Sbjct: 8 tctgttg 2
>mdo-miR-7333-3p MIMAT0028675 Monodelphis domestica miR-7333-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgttg 7
|||||||
Sbjct: 1 tctgttg 7
>gga-miR-6548-5p MIMAT0025601 Gallus gallus miR-6548-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgttgt 8
|||||||
Sbjct: 8 ctgttgt 2
>hme-miR-3327 MIMAT0024981 Heliconius melpomene miR-3327
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgttgt 8
|||||||
Sbjct: 8 ctgttgt 2
>hsa-miR-4709-5p MIMAT0019811 Homo sapiens miR-4709-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgttgt 8
|||||||
Sbjct: 7 ctgttgt 1
>cin-miR-4001f-3p MIMAT0016457 Ciona intestinalis miR-4001f-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 ctgttgt 8
|||||||
Sbjct: 2 ctgttgt 8
>ppy-miR-1267 MIMAT0016191 Pongo pygmaeus miR-1267
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tctgttg 7
|||||||
Sbjct: 1 tctgttg 7
>bmo-miR-3327-5p MIMAT0015514 Bombyx mori miR-3327-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgttgt 8
|||||||
Sbjct: 8 ctgttgt 2
>hma-miR-3014 MIMAT0014683 Hydra magnipapillata miR-3014
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tctgttg 7
|||||||
Sbjct: 8 tctgttg 2
>tgu-miR-21-3p MIMAT0014636 Taeniopygia guttata miR-21-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgttgt 8
|||||||
Sbjct: 8 ctgttgt 2
>mtr-miR2592s-5p MIMAT0026925 Medicago truncatula miR2592s-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 ctgttgt 8
|||||||
Sbjct: 7 ctgttgt 1
>mtr-miR2592b-5p MIMAT00
