BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b8-5p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
osa-miR6249b MIMAT0031378 Oryza sativa miR6249b 14 20
mdo-miR-7291-3p MIMAT0028567 Monodelphis domestica miR-7291-3p 14 20
hsa-miR-6754-3p MIMAT0027409 Homo sapiens miR-6754-3p 14 20
osa-miR6249a MIMAT0024871 Oryza sativa miR6249a 14 20
ath-miR5999 MIMAT0023525 Arabidopsis thaliana miR5999 14 20
rno-miR-3551-5p MIMAT0017809 Rattus norvegicus miR-3551-5p 14 20
mdv2-miR-M29-5p MIMAT0004476 Mareks disease miR-M29-5p 14 20
efu-miR-9270 MIMAT0034902 Eptesicus fuscus miR-9270 12 80
efu-miR-9218 MIMAT0034810 Eptesicus fuscus miR-9218 12 80
eca-miR-8910 MIMAT0034438 Equus caballus miR-8910 12 80
str-miR-1175-5p MIMAT0033376 Strongyloides ratti miR-1175-5p 12 80
str-miR-252b-3p MIMAT0033371 Strongyloides ratti miR-252b-3p 12 80
ppc-miR-8364t-5p MIMAT0033284 Pristionchus pacificus miR-8364t-5p 12 80
ppc-miR-8364s-5p MIMAT0033270 Pristionchus pacificus miR-8364s-5p 12 80
ppc-miR-8364r-5p MIMAT0033262 Pristionchus pacificus miR-8364r-5p 12 80
ppc-miR-8364e-5p MIMAT0033260 Pristionchus pacificus miR-8364e-5p 12 80
ppc-miR-8345-5p MIMAT0033236 Pristionchus pacificus miR-8345-5p 12 80
ppc-miR-8364i-5p MIMAT0033216 Pristionchus pacificus miR-8364i-5p 12 80
ppc-miR-8332-3p MIMAT0033209 Pristionchus pacificus miR-8332-3p 12 80
ppc-miR-8364m-5p MIMAT0033188 Pristionchus pacificus miR-8364m-5p 12 80
ppc-miR-8364a-5p MIMAT0033176 Pristionchus pacificus miR-8364a-5p 12 80
ppc-miR-8364w-5p MIMAT0033161 Pristionchus pacificus miR-8364w-5p 12 80
ppc-miR-8364g-5p MIMAT0033119 Pristionchus pacificus miR-8364g-5p 12 80
ppc-miR-8364f-5p MIMAT0033109 Pristionchus pacificus miR-8364f-5p 12 80
ppc-miR-8364b-5p MIMAT0033081 Pristionchus pacificus miR-8364b-5p 12 80
ppc-miR-8364n-5p MIMAT0033045 Pristionchus pacificus miR-8364n-5p 12 80
ppc-miR-8364c-5p MIMAT0033030 Pristionchus pacificus miR-8364c-5p 12 80
ppc-miR-8364j-5p MIMAT0033026 Pristionchus pacificus miR-8364j-5p 12 80
hbv-miR-B8-3p MIMAT0031768 Herpes B miR-B8-3p 12 80
prd-miR-1175-5p MIMAT0030502 Panagrellus redivivus miR-1175-5p 12 80
mdo-miR-7355-3p MIMAT0028723 Monodelphis domestica miR-7355-3p 12 80
mml-miR-7186-3p MIMAT0028327 Macaca mulatta miR-7186-3p 12 80
mdm-miR169f MIMAT0026068 Malus domestica miR169f 12 80
mdm-miR169e MIMAT0026067 Malus domestica miR169e 12 80
mmu-miR-7116-5p MIMAT0028129 Mus musculus miR-7116-5p 12 80
mmu-miR-7094-1-5p MIMAT0028094 Mus musculus miR-7094-1-5p 12 80
mmu-miR-7013-5p MIMAT0027930 Mus musculus miR-7013-5p 12 80
gga-miR-6699-5p MIMAT0025808 Gallus gallus miR-6699-5p 12 80
gga-miR-6635-5p MIMAT0025731 Gallus gallus miR-6635-5p 12 80
hsa-miR-6515-3p MIMAT0025487 Homo sapiens miR-6515-3p 12 80
ppe-miR6285 MIMAT0027316 Prunus persica miR6285 12 80
hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202 12 80
hsa-miR-6126 MIMAT0024599 Homo sapiens miR-6126 12 80
gma-miR5376 MIMAT0021617 Glycine max miR5376 12 80
mtr-miR5293 MIMAT0021359 Medicago truncatula miR5293 12 80
mtr-miR160f MIMAT0021268 Medicago truncatula miR160f 12 80
mtr-miR5227 MIMAT0021186 Medicago truncatula miR5227 12 80
pma-miR-4545-5p MIMAT0019575 Petromyzon marinus miR-4545-5p 12 80
oar-miR-412-5p MIMAT0019330 Ovis aries miR-412-5p 12 80
tae-miR395a MIMAT0018222 Triticum aestivum miR395a 12 80
hsa-miR-676-5p MIMAT0018203 Homo sapiens miR-676-5p 12 80
hsa-miR-3611 MIMAT0017988 Homo sapiens miR-3611 12 80
sja-miR-31-3p MIMAT0016256 Schistosoma japonicum miR-31-3p 12 80
aly-miR163-3p.1 MIMAT0017680 Arabidopsis lyrata miR163-3p.1 12 80
aly-miR835-3p MIMAT0017620 Arabidopsis lyrata miR835-3p 12 80
bmo-miR-3374-5p MIMAT0015563 Bombyx mori miR-3374-5p 12 80
bmo-miR-3252 MIMAT0015435 Bombyx mori miR-3252 12 80
bmo-miR-3207 MIMAT0015385 Bombyx mori miR-3207 12 80
osa-miR395y MIMAT0014125 Oryza sativa miR395y 12 80
osa-miR395x MIMAT0014124 Oryza sativa miR395x 12 80
zma-miR395p-3p MIMAT0014013 Zea mays miR395p-3p 12 80
zma-miR395o-3p MIMAT0014012 Zea mays miR395o-3p 12 80
zma-miR395n-3p MIMAT0014011 Zea mays miR395n-3p 12 80
zma-miR395m-3p MIMAT0014010 Zea mays miR395m-3p 12 80
zma-miR395l-3p MIMAT0014009 Zea mays miR395l-3p 12 80
zma-miR395k-3p MIMAT0014008 Zea mays miR395k-3p 12 80
zma-miR395j-3p MIMAT0014007 Zea mays miR395j-3p 12 80
zma-miR395i-3p MIMAT0014006 Zea mays miR395i-3p 12 80
zma-miR395h-3p MIMAT0014005 Zea mays miR395h-3p 12 80
zma-miR395g-3p MIMAT0014004 Zea mays miR395g-3p 12 80
zma-miR395f-3p MIMAT0014003 Zea mays miR395f-3p 12 80
zma-miR395e-3p MIMAT0014002 Zea mays miR395e-3p 12 80
zma-miR395d-3p MIMAT0014001 Zea mays miR395d-3p 12 80
iltv-miR-I5-3p MIMAT0012729 Infectious laryngotracheitis miR-I5-3p 12 80
bmo-miR-2842 MIMAT0013761 Bombyx mori miR-2842 12 80
sme-miR-2200-5p MIMAT0011421 Schmidtea mediterranea miR-2200-5p 12 80
sbi-miR395l MIMAT0011356 Sorghum bicolor miR395l 12 80
sbi-miR395k MIMAT0011355 Sorghum bicolor miR395k 12 80
sbi-miR395j MIMAT0011354 Sorghum bicolor miR395j 12 80
sbi-miR395i MIMAT0011353 Sorghum bicolor miR395i 12 80
sbi-miR395h MIMAT0011352 Sorghum bicolor miR395h 12 80
sbi-miR395g MIMAT0011351 Sorghum bicolor miR395g 12 80
sbi-miR395c MIMAT0011350 Sorghum bicolor miR395c 12 80
gga-miR-1550-3p MIMAT0007404 Gallus gallus miR-1550-3p 12 80
mcmv-miR-m01-3-5p MIMAT0005536 Mouse cytomegalovirus miR-m01-3-5p 12 80
sme-miR-281-5p MIMAT0004012 Schmidtea mediterranea miR-281-5p 12 80
osa-miR395r MIMAT0003878 Oryza sativa miR395r 12 80
osa-miR395w MIMAT0003877 Oryza sativa miR395w 12 80
osa-miR395v MIMAT0003876 Oryza sativa miR395v 12 80
osa-miR395q MIMAT0003874 Oryza sativa miR395q 12 80
osa-miR395p MIMAT0003873 Oryza sativa miR395p 12 80
osa-miR395n MIMAT0003871 Oryza sativa miR395n 12 80
osa-miR395m MIMAT0003870 Oryza sativa miR395m 12 80
rno-miR-412-3p MIMAT0003124 Rattus norvegicus miR-412-3p 12 80
zma-miR395a-3p MIMAT0001701 Zea mays miR395a-3p 12 80
zma-miR395c-3p MIMAT0001700 Zea mays miR395c-3p 12 80
zma-miR395b-3p MIMAT0001698 Zea mays miR395b-3p 12 80
sbi-miR395e MIMAT0001433 Sorghum bicolor miR395e 12 80
sbi-miR395d MIMAT0001432 Sorghum bicolor miR395d 12 80
sbi-miR395a MIMAT0001430 Sorghum bicolor miR395a 12 80
sbi-miR395b MIMAT0001429 Sorghum bicolor miR395b 12 80
gga-miR-138-1-3p MIMAT0026505 Gallus gallus miR-138-1-3p 12 80
osa-miR395u MIMAT0000975 Oryza sativa miR395u 12 80
osa-miR395a MIMAT0000973 Oryza sativa miR395a 12 80
osa-miR395c MIMAT0000972 Oryza sativa miR395c 12 80
osa-miR395t MIMAT0000969 Oryza sativa miR395t 12 80
osa-miR395s MIMAT0000968 Oryza sativa miR395s 12 80
osa-miR395l MIMAT0000967 Oryza sativa miR395l 12 80
osa-miR395k MIMAT0000966 Oryza sativa miR395k 12 80
osa-miR395j MIMAT0000965 Oryza sativa miR395j 12 80
osa-miR395i MIMAT0000964 Oryza sativa miR395i 12 80
osa-miR395h MIMAT0000963 Oryza sativa miR395h 12 80
osa-miR395g MIMAT0000962 Oryza sativa miR395g 12 80
osa-miR395e MIMAT0000961 Oryza sativa miR395e 12 80
osa-miR395d MIMAT0000960 Oryza sativa miR395d 12 80
osa-miR395b MIMAT0000959 Oryza sativa miR395b 12 80
>osa-miR6249b MIMAT0031378 Oryza sativa miR6249b
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcttcac 7
|||||||
Sbjct: 8 tcttcac 2
>mdo-miR-7291-3p MIMAT0028567 Monodelphis domestica miR-7291-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttcac 7
|||||||
Sbjct: 1 tcttcac 7
>hsa-miR-6754-3p MIMAT0027409 Homo sapiens miR-6754-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttcac 7
|||||||
Sbjct: 1 tcttcac 7
>osa-miR6249a MIMAT0024871 Oryza sativa miR6249a
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcttcac 7
|||||||
Sbjct: 8 tcttcac 2
>ath-miR5999 MIMAT0023525 Arabidopsis thaliana miR5999
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttcac 7
|||||||
Sbjct: 1 tcttcac 7
>rno-miR-3551-5p MIMAT0017809 Rattus norvegicus miR-3551-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttcac 7
|||||||
Sbjct: 1 tcttcac 7
>mdv2-miR-M29-5p MIMAT0004476 Mareks disease miR-M29-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttcac 7
|||||||
Sbjct: 1 tcttcac 7
>efu-miR-9270 MIMAT0034902 Eptesicus fuscus miR-9270
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 7 cttcac 2
>efu-miR-9218 MIMAT0034810 Eptesicus fuscus miR-9218
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 8 tcttca 3
>eca-miR-8910 MIMAT0034438 Equus caballus miR-8910
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>str-miR-1175-5p MIMAT0033376 Strongyloides ratti miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 8 cttcac 3
>str-miR-252b-3p MIMAT0033371 Strongyloides ratti miR-252b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttcac 7
||||||
Sbjct: 3 cttcac 8
>ppc-miR-8364t-5p MIMAT0033284 Pristionchus pacificus
miR-8364t-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364s-5p MIMAT0033270 Pristionchus pacificus
miR-8364s-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364r-5p MIMAT0033262 Pristionchus pacificus
miR-8364r-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364e-5p MIMAT0033260 Pristionchus pacificus
miR-8364e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8345-5p MIMAT0033236 Pristionchus pacificus miR-8345-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364i-5p MIMAT0033216 Pristionchus pacificus
miR-8364i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8332-3p MIMAT0033209 Pristionchus pacificus miR-8332-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>ppc-miR-8364m-5p MIMAT0033188 Pristionchus pacificus
miR-8364m-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364a-5p MIMAT0033176 Pristionchus pacificus
miR-8364a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364w-5p MIMAT0033161 Pristionchus pacificus
miR-8364w-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364g-5p MIMAT0033119 Pristionchus pacificus
miR-8364g-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364f-5p MIMAT0033109 Pristionchus pacificus
miR-8364f-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364b-5p MIMAT0033081 Pristionchus pacificus
miR-8364b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364n-5p MIMAT0033045 Pristionchus pacificus
miR-8364n-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364c-5p MIMAT0033030 Pristionchus pacificus
miR-8364c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>ppc-miR-8364j-5p MIMAT0033026 Pristionchus pacificus
miR-8364j-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>hbv-miR-B8-3p MIMAT0031768 Herpes B miR-B8-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 3 tcttca 8
>prd-miR-1175-5p MIMAT0030502 Panagrellus redivivus miR-1175-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 8 cttcac 3
>mdo-miR-7355-3p MIMAT0028723 Monodelphis domestica miR-7355-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttcac 7
||||||
Sbjct: 1 cttcac 6
>mml-miR-7186-3p MIMAT0028327 Macaca mulatta miR-7186-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>mdm-miR169f MIMAT0026068 Malus domestica miR169f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>mdm-miR169e MIMAT0026067 Malus domestica miR169e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>mmu-miR-7116-5p MIMAT0028129 Mus musculus miR-7116-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>mmu-miR-7094-1-5p MIMAT0028094 Mus musculus miR-7094-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 8 tcttca 3
>mmu-miR-7013-5p MIMAT0027930 Mus musculus miR-7013-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 8 tcttca 3
>gga-miR-6699-5p MIMAT0025808 Gallus gallus miR-6699-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>gga-miR-6635-5p MIMAT0025731 Gallus gallus miR-6635-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>hsa-miR-6515-3p MIMAT0025487 Homo sapiens miR-6515-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 3 tcttca 8
>ppe-miR6285 MIMAT0027316 Prunus persica miR6285
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 8 cttcac 3
>hvu-miR6202 MIMAT0024830 Hordeum vulgare miR6202
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>hsa-miR-6126 MIMAT0024599 Homo sapiens miR-6126
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>gma-miR5376 MIMAT0021617 Glycine max miR5376
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>mtr-miR5293 MIMAT0021359 Medicago truncatula miR5293
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 8 tcttca 3
>mtr-miR160f MIMAT0021268 Medicago truncatula miR160f
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 8 cttcac 3
>mtr-miR5227 MIMAT0021186 Medicago truncatula miR5227
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>pma-miR-4545-5p MIMAT0019575 Petromyzon marinus miR-4545-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttcac 7
||||||
Sbjct: 1 cttcac 6
>oar-miR-412-5p MIMAT0019330 Ovis aries miR-412-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttcac 7
||||||
Sbjct: 1 cttcac 6
>tae-miR395a MIMAT0018222 Triticum aestivum miR395a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>hsa-miR-676-5p MIMAT0018203 Homo sapiens miR-676-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tcttca 6
||||||
Sbjct: 1 tcttca 6
>hsa-miR-3611 MIMAT0017988 Homo sapiens miR-3611
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 8 cttcac 3
>sja-miR-31-3p MIMAT0016256 Schistosoma japonicum miR-31-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttcac 7
||||||
Sbjct: 3 cttcac 8
>aly-miR163-3p.1 MIMAT0017680 Arabidopsis lyrata miR163-3p.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>aly-miR835-3p MIMAT0017620 Arabidopsis lyrata miR835-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>bmo-miR-3374-5p MIMAT0015563 Bombyx mori miR-3374-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>bmo-miR-3252 MIMAT0015435 Bombyx mori miR-3252
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>bmo-miR-3207 MIMAT0015385 Bombyx mori miR-3207
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 8 cttcac 3
>osa-miR395y MIMAT0014125 Oryza sativa miR395y
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395x MIMAT0014124 Oryza sativa miR395x
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395p-3p MIMAT0014013 Zea mays miR395p-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395o-3p MIMAT0014012 Zea mays miR395o-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395n-3p MIMAT0014011 Zea mays miR395n-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395m-3p MIMAT0014010 Zea mays miR395m-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395l-3p MIMAT0014009 Zea mays miR395l-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395k-3p MIMAT0014008 Zea mays miR395k-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395j-3p MIMAT0014007 Zea mays miR395j-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395i-3p MIMAT0014006 Zea mays miR395i-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395h-3p MIMAT0014005 Zea mays miR395h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395g-3p MIMAT0014004 Zea mays miR395g-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395f-3p MIMAT0014003 Zea mays miR395f-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395e-3p MIMAT0014002 Zea mays miR395e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395d-3p MIMAT0014001 Zea mays miR395d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>iltv-miR-I5-3p MIMAT0012729 Infectious laryngotracheitis
miR-I5-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>bmo-miR-2842 MIMAT0013761 Bombyx mori miR-2842
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>sme-miR-2200-5p MIMAT0011421 Schmidtea mediterranea miR-2200-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>sbi-miR395l MIMAT0011356 Sorghum bicolor miR395l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>sbi-miR395k MIMAT0011355 Sorghum bicolor miR395k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>sbi-miR395j MIMAT0011354 Sorghum bicolor miR395j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>sbi-miR395i MIMAT0011353 Sorghum bicolor miR395i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>sbi-miR395h MIMAT0011352 Sorghum bicolor miR395h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>sbi-miR395g MIMAT0011351 Sorghum bicolor miR395g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>sbi-miR395c MIMAT0011350 Sorghum bicolor miR395c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>gga-miR-1550-3p MIMAT0007404 Gallus gallus miR-1550-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttcac 7
||||||
Sbjct: 1 cttcac 6
>mcmv-miR-m01-3-5p MIMAT0005536 Mouse cytomegalovirus
miR-m01-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 8 cttcac 3
>sme-miR-281-5p MIMAT0004012 Schmidtea mediterranea miR-281-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tcttca 6
||||||
Sbjct: 6 tcttca 1
>osa-miR395r MIMAT0003878 Oryza sativa miR395r
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395w MIMAT0003877 Oryza sativa miR395w
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395v MIMAT0003876 Oryza sativa miR395v
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395q MIMAT0003874 Oryza sativa miR395q
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395p MIMAT0003873 Oryza sativa miR395p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395n MIMAT0003871 Oryza sativa miR395n
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395m MIMAT0003870 Oryza sativa miR395m
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>rno-miR-412-3p MIMAT0003124 Rattus norvegicus miR-412-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttcac 7
||||||
Sbjct: 1 cttcac 6
>zma-miR395a-3p MIMAT0001701 Zea mays miR395a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395c-3p MIMAT0001700 Zea mays miR395c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>zma-miR395b-3p MIMAT0001698 Zea mays miR395b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>sbi-miR395e MIMAT0001433 Sorghum bicolor miR395e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>sbi-miR395d MIMAT0001432 Sorghum bicolor miR395d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>sbi-miR395a MIMAT0001430 Sorghum bicolor miR395a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>sbi-miR395b MIMAT0001429 Sorghum bicolor miR395b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>gga-miR-138-1-3p MIMAT0026505 Gallus gallus miR-138-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 cttcac 7
||||||
Sbjct: 3 cttcac 8
>osa-miR395u MIMAT0000975 Oryza sativa miR395u
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395a MIMAT0000973 Oryza sativa miR395a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395c MIMAT0000972 Oryza sativa miR395c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395t MIMAT0000969 Oryza sativa miR395t
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395s MIMAT0000968 Oryza sativa miR395s
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395l MIMAT0000967 Oryza sativa miR395l
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395k MIMAT0000966 Oryza sativa miR395k
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395j MIMAT0000965 Oryza sativa miR395j
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395i MIMAT0000964 Oryza sativa miR395i
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395h MIMAT0000963 Oryza sativa miR395h
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395g MIMAT0000962 Oryza sativa miR395g
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395e MIMAT0000961 Oryza sativa miR395e
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395d MIMAT0000960 Oryza sativa miR395d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
>osa-miR395b MIMAT0000959 Oryza sativa miR395b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 cttcac 7
||||||
Sbjct: 6 cttcac 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 163
Number of extensions: 156
Number of successful extensions: 116
Number of sequences better than 100.0: 116
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 116
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
