BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv2-miR-m29-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
osa-miR6249b MIMAT0031378 Oryza sativa miR6249b 16 6.9
osa-miR6249a MIMAT0024871 Oryza sativa miR6249a 16 6.9
mdv2-miR-M29-5p MIMAT0004476 Mareks disease miR-M29-5p 16 6.9
eca-miR-9121 MIMAT0034671 Equus caballus miR-9121 14 27
mdo-miR-7291-3p MIMAT0028567 Monodelphis domestica miR-7291-3p 14 27
hsa-miR-6754-3p MIMAT0027409 Homo sapiens miR-6754-3p 14 27
ath-miR5999 MIMAT0023525 Arabidopsis thaliana miR5999 14 27
mtr-miR160f MIMAT0021268 Medicago truncatula miR160f 14 27
rno-miR-3551-5p MIMAT0017809 Rattus norvegicus miR-3551-5p 14 27
>osa-miR6249b MIMAT0031378 Oryza sativa miR6249b
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcttcacg 8
||||||||
Sbjct: 8 tcttcacg 1
>osa-miR6249a MIMAT0024871 Oryza sativa miR6249a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tcttcacg 8
||||||||
Sbjct: 8 tcttcacg 1
>mdv2-miR-M29-5p MIMAT0004476 Mareks disease miR-M29-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcttcacg 8
||||||||
Sbjct: 1 tcttcacg 8
>eca-miR-9121 MIMAT0034671 Equus caballus miR-9121
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttcacg 8
|||||||
Sbjct: 2 cttcacg 8
>mdo-miR-7291-3p MIMAT0028567 Monodelphis domestica miR-7291-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttcac 7
|||||||
Sbjct: 1 tcttcac 7
>hsa-miR-6754-3p MIMAT0027409 Homo sapiens miR-6754-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttcac 7
|||||||
Sbjct: 1 tcttcac 7
>ath-miR5999 MIMAT0023525 Arabidopsis thaliana miR5999
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttcac 7
|||||||
Sbjct: 1 tcttcac 7
>mtr-miR160f MIMAT0021268 Medicago truncatula miR160f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttcacg 8
|||||||
Sbjct: 8 cttcacg 2
>rno-miR-3551-5p MIMAT0017809 Rattus norvegicus miR-3551-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttcac 7
|||||||
Sbjct: 1 tcttcac 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 180
Number of extensions: 168
Number of successful extensions: 122
Number of sequences better than 100.0: 9
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)