BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= iltv-miR-i3
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
iltv-miR-I3 MIMAT0012726 Infectious laryngotracheitis miR-I3 16 6.9
nve-miR-9435 MIMAT0035396 Nematostella vectensis miR-9435 14 27
gsa-miR-9400-5p MIMAT0035346 Gyrodactylus salaris miR-9400-5p 14 27
eca-miR-9086 MIMAT0034631 Equus caballus miR-9086 14 27
prd-miR-7902-5p MIMAT0030614 Panagrellus redivivus miR-7902-5p 14 27
ppe-miR6279 MIMAT0027308 Prunus persica miR6279 14 27
hco-miR-5955 MIMAT0023458 Haemonchus contortus miR-5955 14 27
rmi-miR-5317b MIMAT0021391 Rhipicephalus microplus miR-5317b 14 27
cin-miR-4115-5p MIMAT0016705 Ciona intestinalis miR-4115-5p 14 27
ppt-miR904b MIMAT0004380 Physcomitrella patens miR904b 14 27
ppt-miR904a MIMAT0004379 Physcomitrella patens miR904a 14 27
>iltv-miR-I3 MIMAT0012726 Infectious laryngotracheitis miR-I3
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcttgtct 8
||||||||
Sbjct: 1 tcttgtct 8
>nve-miR-9435 MIMAT0035396 Nematostella vectensis miR-9435
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttgtc 7
|||||||
Sbjct: 1 tcttgtc 7
>gsa-miR-9400-5p MIMAT0035346 Gyrodactylus salaris miR-9400-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttgtct 8
|||||||
Sbjct: 8 cttgtct 2
>eca-miR-9086 MIMAT0034631 Equus caballus miR-9086
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttgtct 8
|||||||
Sbjct: 1 cttgtct 7
>prd-miR-7902-5p MIMAT0030614 Panagrellus redivivus miR-7902-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttgtc 7
|||||||
Sbjct: 2 tcttgtc 8
>ppe-miR6279 MIMAT0027308 Prunus persica miR6279
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttgtct 8
|||||||
Sbjct: 8 cttgtct 2
>hco-miR-5955 MIMAT0023458 Haemonchus contortus miR-5955
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tcttgtc 7
|||||||
Sbjct: 8 tcttgtc 2
>rmi-miR-5317b MIMAT0021391 Rhipicephalus microplus miR-5317b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttgtc 7
|||||||
Sbjct: 1 tcttgtc 7
>cin-miR-4115-5p MIMAT0016705 Ciona intestinalis miR-4115-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttgtct 8
|||||||
Sbjct: 1 cttgtct 7
>ppt-miR904b MIMAT0004380 Physcomitrella patens miR904b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttgtc 7
|||||||
Sbjct: 1 tcttgtc 7
>ppt-miR904a MIMAT0004379 Physcomitrella patens miR904a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttgtc 7
|||||||
Sbjct: 1 tcttgtc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 129
Number of extensions: 117
Number of successful extensions: 89
Number of sequences better than 100.0: 11
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
