BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wssv-miR123
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mmu-miR-7009-3p MIMAT0027923 Mus musculus miR-7009-3p 16 6.9
ssc-miR-9817-5p MIMAT0037035 Sus scrofa miR-9817-5p 14 27
tch-miR-9771a MIMAT0036469 Tupaia chinensis miR-9771a 14 27
gra-miR8656 MIMAT0034021 Gossypium raimondii miR8656 14 27
hsa-miR-6124 MIMAT0024597 Homo sapiens miR-6124 14 27
ame-miR-3740 MIMAT0018609 Apis mellifera miR-3740 14 27
esi-miR3468-3p MIMAT0017790 Ectocarpus siliculosus miR3468-3p 14 27
bmo-miR-3279 MIMAT0015464 Bombyx mori miR-3279 14 27
dsi-miR-967-3p MIMAT0012438 Drosophila simulans miR-967-3p 14 27
dme-miR-967-3p MIMAT0020863 Drosophila melanogaster miR-967-3p 14 27
hsa-miR-627-3p MIMAT0026623 Homo sapiens miR-627-3p 14 27
>mmu-miR-7009-3p MIMAT0027923 Mus musculus miR-7009-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tcttttcc 8
||||||||
Sbjct: 1 tcttttcc 8
>ssc-miR-9817-5p MIMAT0037035 Sus scrofa miR-9817-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttttcc 8
|||||||
Sbjct: 1 cttttcc 7
>tch-miR-9771a MIMAT0036469 Tupaia chinensis miR-9771a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttttcc 8
|||||||
Sbjct: 7 cttttcc 1
>gra-miR8656 MIMAT0034021 Gossypium raimondii miR8656
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttttcc 8
|||||||
Sbjct: 8 cttttcc 2
>hsa-miR-6124 MIMAT0024597 Homo sapiens miR-6124
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttttcc 8
|||||||
Sbjct: 8 cttttcc 2
>ame-miR-3740 MIMAT0018609 Apis mellifera miR-3740
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 cttttcc 8
|||||||
Sbjct: 7 cttttcc 1
>esi-miR3468-3p MIMAT0017790 Ectocarpus siliculosus miR3468-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttttc 7
|||||||
Sbjct: 2 tcttttc 8
>bmo-miR-3279 MIMAT0015464 Bombyx mori miR-3279
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttttc 7
|||||||
Sbjct: 1 tcttttc 7
>dsi-miR-967-3p MIMAT0012438 Drosophila simulans miR-967-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttttcc 8
|||||||
Sbjct: 1 cttttcc 7
>dme-miR-967-3p MIMAT0020863 Drosophila melanogaster miR-967-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 cttttcc 8
|||||||
Sbjct: 1 cttttcc 7
>hsa-miR-627-3p MIMAT0026623 Homo sapiens miR-627-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tcttttc 7
|||||||
Sbjct: 1 tcttttc 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 167
Number of extensions: 155
Number of successful extensions: 122
Number of sequences better than 100.0: 11
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
