BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m3-5p_-1_5
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
nta-miR6145a MIMAT0024731 Nicotiana tabacum miR6145a 16 6.9
nve-miR-9467 MIMAT0035426 Nematostella vectensis miR-9467 14 27
sma-miR-124a-5p MIMAT0025025 Schistosoma mansoni miR-124a-5p 14 27
ppe-miR6288a MIMAT0027320 Prunus persica miR6288a 14 27
pgi-miR6137b MIMAT0027258 Panax ginseng miR6137b 14 27
pgi-miR6137a MIMAT0027257 Panax ginseng miR6137a 14 27
gma-miR5380b MIMAT0021622 Glycine max miR5380b 14 27
gma-miR5380a MIMAT0021621 Glycine max miR5380a 14 27
gma-miR5379 MIMAT0021620 Glycine max miR5379 14 27
dme-miR-4946-5p MIMAT0020156 Drosophila melanogaster miR-4946-5p 14 27
hsa-miR-3662 MIMAT0018083 Homo sapiens miR-3662 14 27
sja-miR-124-5p MIMAT0016262 Schistosoma japonicum miR-124-5p 14 27
hsa-miR-1250-3p MIMAT0026740 Homo sapiens miR-1250-3p 14 27
mdv1-miR-M3-5p MIMAT0003923 Mareks disease miR-M3-5p 14 27
mmu-miR-694 MIMAT0003474 Mus musculus miR-694 14 27
>nta-miR6145a MIMAT0024731 Nicotiana tabacum miR6145a
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tgaaaatg 8
||||||||
Sbjct: 8 tgaaaatg 1
>nve-miR-9467 MIMAT0035426 Nematostella vectensis miR-9467
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaaaatg 8
|||||||
Sbjct: 7 gaaaatg 1
>sma-miR-124a-5p MIMAT0025025 Schistosoma mansoni miR-124a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaaaatg 8
|||||||
Sbjct: 8 gaaaatg 2
>ppe-miR6288a MIMAT0027320 Prunus persica miR6288a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gaaaatg 8
|||||||
Sbjct: 1 gaaaatg 7
>pgi-miR6137b MIMAT0027258 Panax ginseng miR6137b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaaat 7
|||||||
Sbjct: 2 tgaaaat 8
>pgi-miR6137a MIMAT0027257 Panax ginseng miR6137a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaaat 7
|||||||
Sbjct: 2 tgaaaat 8
>gma-miR5380b MIMAT0021622 Glycine max miR5380b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gaaaatg 8
|||||||
Sbjct: 1 gaaaatg 7
>gma-miR5380a MIMAT0021621 Glycine max miR5380a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gaaaatg 8
|||||||
Sbjct: 1 gaaaatg 7
>gma-miR5379 MIMAT0021620 Glycine max miR5379
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaaat 7
|||||||
Sbjct: 2 tgaaaat 8
>dme-miR-4946-5p MIMAT0020156 Drosophila melanogaster
miR-4946-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgaaaat 7
|||||||
Sbjct: 8 tgaaaat 2
>hsa-miR-3662 MIMAT0018083 Homo sapiens miR-3662
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gaaaatg 8
|||||||
Sbjct: 1 gaaaatg 7
>sja-miR-124-5p MIMAT0016262 Schistosoma japonicum miR-124-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaaaatg 8
|||||||
Sbjct: 8 gaaaatg 2
>hsa-miR-1250-3p MIMAT0026740 Homo sapiens miR-1250-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaaaatg 8
|||||||
Sbjct: 8 gaaaatg 2
>mdv1-miR-M3-5p MIMAT0003923 Mareks disease miR-M3-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaaat 7
|||||||
Sbjct: 2 tgaaaat 8
>mmu-miR-694 MIMAT0003474 Mus musculus miR-694
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaaat 7
|||||||
Sbjct: 2 tgaaaat 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 182
Number of extensions: 166
Number of successful extensions: 135
Number of sequences better than 100.0: 15
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 15
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
