BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-6
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ggo-miR-4738 MIMAT0024284 Gorilla gorilla miR-4738 16 6.9
hsa-miR-4738-3p MIMAT0019867 Homo sapiens miR-4738-3p 16 6.9
mghv-miR-M1-6-3p MIMAT0001569 Mouse gammaherpesvirus miR-M1-6-3p 16 6.9
mdo-miR-7338-5p MIMAT0028684 Monodelphis domestica miR-7338-5p 14 27
gma-miR5781 MIMAT0023186 Glycine max miR5781 14 27
cin-miR-5604-5p MIMAT0022333 Ciona intestinalis miR-5604-5p 14 27
tca-miR-3858-3p MIMAT0018783 Tribolium castaneum miR-3858-3p 14 27
cin-miR-4000i-5p MIMAT0016442 Ciona intestinalis miR-4000i-5p 14 27
cin-miR-4000h-5p MIMAT0016440 Ciona intestinalis miR-4000h-5p 14 27
cin-miR-4000g-5p MIMAT0016438 Ciona intestinalis miR-4000g-5p 14 27
cin-miR-4000f-5p MIMAT0016436 Ciona intestinalis miR-4000f-5p 14 27
cin-miR-4000e-5p MIMAT0016434 Ciona intestinalis miR-4000e-5p 14 27
cin-miR-4000b-5p MIMAT0016432 Ciona intestinalis miR-4000b-5p 14 27
cin-miR-4000d-5p MIMAT0016428 Ciona intestinalis miR-4000d-5p 14 27
cin-miR-4000c-5p MIMAT0016426 Ciona intestinalis miR-4000c-5p 14 27
odi-miR-1484 MIMAT0006037 Oikopleura dioica miR-1484 14 27
ath-miR401 MIMAT0001002 Arabidopsis thaliana miR401 14 27
>ggo-miR-4738 MIMAT0024284 Gorilla gorilla miR-4738
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgaaactg 8
||||||||
Sbjct: 1 tgaaactg 8
>hsa-miR-4738-3p MIMAT0019867 Homo sapiens miR-4738-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgaaactg 8
||||||||
Sbjct: 1 tgaaactg 8
>mghv-miR-M1-6-3p MIMAT0001569 Mouse gammaherpesvirus
miR-M1-6-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgaaactg 8
||||||||
Sbjct: 1 tgaaactg 8
>mdo-miR-7338-5p MIMAT0028684 Monodelphis domestica miR-7338-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgaaact 7
|||||||
Sbjct: 7 tgaaact 1
>gma-miR5781 MIMAT0023186 Glycine max miR5781
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 2 tgaaact 8
>cin-miR-5604-5p MIMAT0022333 Ciona intestinalis miR-5604-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgaaact 7
|||||||
Sbjct: 8 tgaaact 2
>tca-miR-3858-3p MIMAT0018783 Tribolium castaneum miR-3858-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 1 tgaaact 7
>cin-miR-4000i-5p MIMAT0016442 Ciona intestinalis miR-4000i-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 1 tgaaact 7
>cin-miR-4000h-5p MIMAT0016440 Ciona intestinalis miR-4000h-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 1 tgaaact 7
>cin-miR-4000g-5p MIMAT0016438 Ciona intestinalis miR-4000g-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 1 tgaaact 7
>cin-miR-4000f-5p MIMAT0016436 Ciona intestinalis miR-4000f-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 1 tgaaact 7
>cin-miR-4000e-5p MIMAT0016434 Ciona intestinalis miR-4000e-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 1 tgaaact 7
>cin-miR-4000b-5p MIMAT0016432 Ciona intestinalis miR-4000b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 1 tgaaact 7
>cin-miR-4000d-5p MIMAT0016428 Ciona intestinalis miR-4000d-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 1 tgaaact 7
>cin-miR-4000c-5p MIMAT0016426 Ciona intestinalis miR-4000c-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 1 tgaaact 7
>odi-miR-1484 MIMAT0006037 Oikopleura dioica miR-1484
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaaact 7
|||||||
Sbjct: 1 tgaaact 7
>ath-miR401 MIMAT0001002 Arabidopsis thaliana miR401
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gaaactg 8
|||||||
Sbjct: 2 gaaactg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 154
Number of extensions: 134
Number of successful extensions: 112
Number of sequences better than 100.0: 17
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)