BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-11-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9013 MIMAT0034554 Equus caballus miR-9013 16 6.9
ata-miR5062b-3p MIMAT0037203 Aegilops tauschii miR5062b-3p 14 27
ata-miR5062a-5p MIMAT0037186 Aegilops tauschii miR5062a-5p 14 27
tae-miR5062-5p MIMAT0035781 Triticum aestivum miR5062-5p 14 27
prd-miR-7947-3p MIMAT0030759 Panagrellus redivivus miR-7947-3p 14 27
rno-miR-6317 MIMAT0025054 Rattus norvegicus miR-6317 14 27
ppe-miR6278 MIMAT0027307 Prunus persica miR6278 14 27
osa-miR5525 MIMAT0022160 Oryza sativa miR5525 14 27
bdi-miR5062a MIMAT0020568 Brachypodium distachyon miR5062a 14 27
gga-miR-1572 MIMAT0007432 Gallus gallus miR-1572 14 27
>eca-miR-9013 MIMAT0034554 Equus caballus miR-9013
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tgaacctg 8
||||||||
Sbjct: 8 tgaacctg 1
>ata-miR5062b-3p MIMAT0037203 Aegilops tauschii miR5062b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaacct 7
|||||||
Sbjct: 1 tgaacct 7
>ata-miR5062a-5p MIMAT0037186 Aegilops tauschii miR5062a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaacct 7
|||||||
Sbjct: 1 tgaacct 7
>tae-miR5062-5p MIMAT0035781 Triticum aestivum miR5062-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaacct 7
|||||||
Sbjct: 1 tgaacct 7
>prd-miR-7947-3p MIMAT0030759 Panagrellus redivivus miR-7947-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaacct 7
|||||||
Sbjct: 2 tgaacct 8
>rno-miR-6317 MIMAT0025054 Rattus norvegicus miR-6317
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaacct 7
|||||||
Sbjct: 2 tgaacct 8
>ppe-miR6278 MIMAT0027307 Prunus persica miR6278
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaacct 7
|||||||
Sbjct: 1 tgaacct 7
>osa-miR5525 MIMAT0022160 Oryza sativa miR5525
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaacct 7
|||||||
Sbjct: 1 tgaacct 7
>bdi-miR5062a MIMAT0020568 Brachypodium distachyon miR5062a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaacct 7
|||||||
Sbjct: 1 tgaacct 7
>gga-miR-1572 MIMAT0007432 Gallus gallus miR-1572
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gaacctg 8
|||||||
Sbjct: 1 gaacctg 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 128
Number of extensions: 117
Number of successful extensions: 74
Number of sequences better than 100.0: 10
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)