BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hcmv-miR-us5-1
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bbe-miR-4865-5p MIMAT0031687 Branchiostoma belcheri miR-4865-5p 16 6.9
bfl-miR-4865-5p MIMAT0020099 Branchiostoma floridae miR-4865-5p 16 6.9
hcmv-miR-US5-1 MIMAT0001579 Human cytomegalovirus miR-US5-1 16 6.9
nve-miR-9435 MIMAT0035396 Nematostella vectensis miR-9435 14 27
oan-miR-7426-3p MIMAT0029003 Ornithorhynchus anatinus miR-7426-3p 14 27
mml-miR-7163-5p MIMAT0028244 Macaca mulatta miR-7163-5p 14 27
mdm-miR535c MIMAT0026026 Malus domestica miR535c 14 27
mdm-miR535b MIMAT0026025 Malus domestica miR535b 14 27
hco-miR-5955 MIMAT0023458 Haemonchus contortus miR-5955 14 27
ath-miR5024-5p MIMAT0020530 Arabidopsis thaliana miR5024-5p 14 27
mmu-miR-3967 MIMAT0019351 Mus musculus miR-3967 14 27
hsa-miR-3655 MIMAT0018075 Homo sapiens miR-3655 14 27
tca-miR-184-5p MIMAT0019118 Tribolium castaneum miR-184-5p 14 27
bmo-miR-184-5p MIMAT0015276 Bombyx mori miR-184-5p 14 27
cre-miR1160.2 MIMAT0005410 Chlamydomonas reinhardtii miR1160.2 14 27
ppt-miR904b MIMAT0004380 Physcomitrella patens miR904b 14 27
ppt-miR904a MIMAT0004379 Physcomitrella patens miR904a 14 27
>bbe-miR-4865-5p MIMAT0031687 Branchiostoma belcheri miR-4865-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tgacaagc 8
||||||||
Sbjct: 8 tgacaagc 1
>bfl-miR-4865-5p MIMAT0020099 Branchiostoma floridae miR-4865-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tgacaagc 8
||||||||
Sbjct: 8 tgacaagc 1
>hcmv-miR-US5-1 MIMAT0001579 Human cytomegalovirus miR-US5-1
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgacaagc 8
||||||||
Sbjct: 1 tgacaagc 8
>nve-miR-9435 MIMAT0035396 Nematostella vectensis miR-9435
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaag 7
|||||||
Sbjct: 8 tgacaag 2
>oan-miR-7426-3p MIMAT0029003 Ornithorhynchus anatinus
miR-7426-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacaag 7
|||||||
Sbjct: 1 tgacaag 7
>mml-miR-7163-5p MIMAT0028244 Macaca mulatta miR-7163-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacaag 7
|||||||
Sbjct: 2 tgacaag 8
>mdm-miR535c MIMAT0026026 Malus domestica miR535c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacaag 7
|||||||
Sbjct: 1 tgacaag 7
>mdm-miR535b MIMAT0026025 Malus domestica miR535b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacaag 7
|||||||
Sbjct: 1 tgacaag 7
>hco-miR-5955 MIMAT0023458 Haemonchus contortus miR-5955
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacaag 7
|||||||
Sbjct: 1 tgacaag 7
>ath-miR5024-5p MIMAT0020530 Arabidopsis thaliana miR5024-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacaag 7
|||||||
Sbjct: 2 tgacaag 8
>mmu-miR-3967 MIMAT0019351 Mus musculus miR-3967
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gacaagc 8
|||||||
Sbjct: 8 gacaagc 2
>hsa-miR-3655 MIMAT0018075 Homo sapiens miR-3655
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gacaagc 8
|||||||
Sbjct: 7 gacaagc 1
>tca-miR-184-5p MIMAT0019118 Tribolium castaneum miR-184-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaag 7
|||||||
Sbjct: 8 tgacaag 2
>bmo-miR-184-5p MIMAT0015276 Bombyx mori miR-184-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaag 7
|||||||
Sbjct: 8 tgacaag 2
>cre-miR1160.2 MIMAT0005410 Chlamydomonas reinhardtii miR1160.2
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacaag 7
|||||||
Sbjct: 1 tgacaag 7
>ppt-miR904b MIMAT0004380 Physcomitrella patens miR904b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaag 7
|||||||
Sbjct: 8 tgacaag 2
>ppt-miR904a MIMAT0004379 Physcomitrella patens miR904a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaag 7
|||||||
Sbjct: 8 tgacaag 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 140
Number of extensions: 120
Number of successful extensions: 103
Number of sequences better than 100.0: 17
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 17
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
