BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d6-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D6-5p MIMAT0028175 Duck enteritis miR-D6-5p 16 6.9
tch-miR-592 MIMAT0036478 Tupaia chinensis miR-592 14 27
chi-miR-592 MIMAT0036280 Capra hircus miR-592 14 27
efu-miR-592 MIMAT0035159 Eptesicus fuscus miR-592 14 27
efu-miR-9294 MIMAT0034955 Eptesicus fuscus miR-9294 14 27
efu-miR-9229f MIMAT0034847 Eptesicus fuscus miR-9229f 14 27
gra-miR8716 MIMAT0034106 Gossypium raimondii miR8716 14 27
mmu-miR-7226-3p MIMAT0028421 Mus musculus miR-7226-3p 14 27
mmu-miR-6903-3p MIMAT0027707 Mus musculus miR-6903-3p 14 27
ggo-miR-592 MIMAT0024198 Gorilla gorilla miR-592 14 27
tca-miR-3882-5p MIMAT0018860 Tribolium castaneum miR-3882-5p 14 27
ppy-miR-597 MIMAT0016039 Pongo pygmaeus miR-597 14 27
ppy-miR-592 MIMAT0016035 Pongo pygmaeus miR-592 14 27
eca-miR-592 MIMAT0012946 Equus caballus miR-592 14 27
mmu-miR-599 MIMAT0012772 Mus musculus miR-599 14 27
mmu-miR-1970 MIMAT0009444 Mus musculus miR-1970 14 27
ptr-miR-597 MIMAT0008266 Pan troglodytes miR-597 14 27
ptr-miR-592 MIMAT0008263 Pan troglodytes miR-592 14 27
mml-miR-597 MIMAT0006454 Macaca mulatta miR-597 14 27
mml-miR-592-5p MIMAT0006452 Macaca mulatta miR-592-5p 14 27
hsa-miR-597-5p MIMAT0003265 Homo sapiens miR-597-5p 14 27
hsa-miR-592 MIMAT0003260 Homo sapiens miR-592 14 27
>dev-miR-D6-5p MIMAT0028175 Duck enteritis miR-D6-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgacacac 8
||||||||
Sbjct: 1 tgacacac 8
>tch-miR-592 MIMAT0036478 Tupaia chinensis miR-592
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
>chi-miR-592 MIMAT0036280 Capra hircus miR-592
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
>efu-miR-592 MIMAT0035159 Eptesicus fuscus miR-592
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
>efu-miR-9294 MIMAT0034955 Eptesicus fuscus miR-9294
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gacacac 8
|||||||
Sbjct: 7 gacacac 1
>efu-miR-9229f MIMAT0034847 Eptesicus fuscus miR-9229f
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 7 tgacaca 1
>gra-miR8716 MIMAT0034106 Gossypium raimondii miR8716
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
>mmu-miR-7226-3p MIMAT0028421 Mus musculus miR-7226-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacaca 7
|||||||
Sbjct: 1 tgacaca 7
>mmu-miR-6903-3p MIMAT0027707 Mus musculus miR-6903-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gacacac 8
|||||||
Sbjct: 8 gacacac 2
>ggo-miR-592 MIMAT0024198 Gorilla gorilla miR-592
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
>tca-miR-3882-5p MIMAT0018860 Tribolium castaneum miR-3882-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacaca 7
|||||||
Sbjct: 2 tgacaca 8
>ppy-miR-597 MIMAT0016039 Pongo pygmaeus miR-597
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 7 tgacaca 1
>ppy-miR-592 MIMAT0016035 Pongo pygmaeus miR-592
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
>eca-miR-592 MIMAT0012946 Equus caballus miR-592
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
>mmu-miR-599 MIMAT0012772 Mus musculus miR-599
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
>mmu-miR-1970 MIMAT0009444 Mus musculus miR-1970
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 7 tgacaca 1
>ptr-miR-597 MIMAT0008266 Pan troglodytes miR-597
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 7 tgacaca 1
>ptr-miR-592 MIMAT0008263 Pan troglodytes miR-592
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
>mml-miR-597 MIMAT0006454 Macaca mulatta miR-597
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 7 tgacaca 1
>mml-miR-592-5p MIMAT0006452 Macaca mulatta miR-592-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
>hsa-miR-597-5p MIMAT0003265 Homo sapiens miR-597-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 7 tgacaca 1
>hsa-miR-592 MIMAT0003260 Homo sapiens miR-592
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacaca 7
|||||||
Sbjct: 8 tgacaca 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 237
Number of extensions: 214
Number of successful extensions: 172
Number of sequences better than 100.0: 22
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 22
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
