BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hcmv-miR-us4-3p6
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

hcmv-miR-US4-3p MIMAT0026628 Human cytomegalovirus miR-US4-3p          16   6.9  
efu-miR-9198c MIMAT0034781 Eptesicus fuscus miR-9198c                  14      27
pxy-miR-8488 MIMAT0033695 Plutella xylostella miR-8488                 14      27
ppc-miR-8226-3p MIMAT0032897 Pristionchus pacificus miR-8226-3p        14      27
mmu-miR-7243-5p MIMAT0029910 Mus musculus miR-7243-5p                  14      27
mmu-miR-7649-5p MIMAT0029800 Mus musculus miR-7649-5p                  14      27
mml-miR-7163-3p MIMAT0028245 Macaca mulatta miR-7163-3p                14      27
mmu-miR-6407 MIMAT0025160 Mus musculus miR-6407                        14      27
mghv-miR-M1-11-5p MIMAT0018168 Mouse gammaherpesvirus miR-M1-11-5p     14      27
hsa-miR-2277-3p MIMAT0011777 Homo sapiens miR-2277-3p                  14      27
>hcmv-miR-US4-3p MIMAT0026628 Human cytomegalovirus miR-US4-3p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tgacagcc 8
         ||||||||
Sbjct: 1 tgacagcc 8
>efu-miR-9198c MIMAT0034781 Eptesicus fuscus miR-9198c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgacagc 7
         |||||||
Sbjct: 8 tgacagc 2
>pxy-miR-8488 MIMAT0033695 Plutella xylostella miR-8488
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgacagc 7
         |||||||
Sbjct: 8 tgacagc 2
>ppc-miR-8226-3p MIMAT0032897 Pristionchus pacificus miR-8226-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgacagc 7
         |||||||
Sbjct: 2 tgacagc 8
>mmu-miR-7243-5p MIMAT0029910 Mus musculus miR-7243-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgacagc 7
         |||||||
Sbjct: 8 tgacagc 2
>mmu-miR-7649-5p MIMAT0029800 Mus musculus miR-7649-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgacagc 7
         |||||||
Sbjct: 1 tgacagc 7
>mml-miR-7163-3p MIMAT0028245 Macaca mulatta miR-7163-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gacagcc 8
         |||||||
Sbjct: 1 gacagcc 7
>mmu-miR-6407 MIMAT0025160 Mus musculus miR-6407
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gacagcc 8
         |||||||
Sbjct: 8 gacagcc 2
>mghv-miR-M1-11-5p MIMAT0018168 Mouse gammaherpesvirus
         miR-M1-11-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgacagc 7
         |||||||
Sbjct: 8 tgacagc 2
>hsa-miR-2277-3p MIMAT0011777 Homo sapiens miR-2277-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgacagc 7
         |||||||
Sbjct: 1 tgacagc 7
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 466
Number of extensions: 455
Number of successful extensions: 321
Number of sequences better than 100.0: 10
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)