BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mghv-miR-m1-8*
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
mghv-miR-M1-8-3p MIMAT0017191 Mouse gammaherpesvirus miR-M1-8-3p 16 6.9
bra-miR9552a-3p MIMAT0035654 Brassica rapa miR9552a-3p 14 27
bdi-miR7748b-3p MIMAT0030249 Brachypodium distachyon miR7748b-3p 14 27
ghr-miR7496b MIMAT0029143 Gossypium hirsutum miR7496b 14 27
ghr-miR7496a MIMAT0029142 Gossypium hirsutum miR7496a 14 27
mdo-miR-7397-3p MIMAT0028893 Monodelphis domestica miR-7397-3p 14 27
gga-miR-6563-5p MIMAT0025834 Gallus gallus miR-6563-5p 14 27
sme-miR-2166 MIMAT0011263 Schmidtea mediterranea miR-2166 14 27
spu-miR-2002-5p MIMAT0019165 Strongylocentrotus purpuratus miR-2... 14 27
>mghv-miR-M1-8-3p MIMAT0017191 Mouse gammaherpesvirus
miR-M1-8-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgaccaac 8
||||||||
Sbjct: 1 tgaccaac 8
>bra-miR9552a-3p MIMAT0035654 Brassica rapa miR9552a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaccaa 7
|||||||
Sbjct: 1 tgaccaa 7
>bdi-miR7748b-3p MIMAT0030249 Brachypodium distachyon
miR7748b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgaccaa 7
|||||||
Sbjct: 7 tgaccaa 1
>ghr-miR7496b MIMAT0029143 Gossypium hirsutum miR7496b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaccaa 7
|||||||
Sbjct: 2 tgaccaa 8
>ghr-miR7496a MIMAT0029142 Gossypium hirsutum miR7496a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaccaa 7
|||||||
Sbjct: 2 tgaccaa 8
>mdo-miR-7397-3p MIMAT0028893 Monodelphis domestica miR-7397-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgaccaa 7
|||||||
Sbjct: 1 tgaccaa 7
>gga-miR-6563-5p MIMAT0025834 Gallus gallus miR-6563-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gaccaac 8
|||||||
Sbjct: 7 gaccaac 1
>sme-miR-2166 MIMAT0011263 Schmidtea mediterranea miR-2166
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgaccaa 7
|||||||
Sbjct: 7 tgaccaa 1
>spu-miR-2002-5p MIMAT0019165 Strongylocentrotus purpuratus
miR-2002-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gaccaac 8
|||||||
Sbjct: 2 gaccaac 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 213
Number of extensions: 203
Number of successful extensions: 129
Number of sequences better than 100.0: 9
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 9
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
