BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m8-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssc-miR-6782-3p MIMAT0037064 Sus scrofa miR-6782-3p 14 20
efu-miR-9310 MIMAT0034983 Eptesicus fuscus miR-9310 14 20
eca-miR-8933 MIMAT0034462 Equus caballus miR-8933 14 20
cfa-miR-8851 MIMAT0034346 Canis familiaris miR-8851 14 20
bdi-miR7779-5p MIMAT0030312 Brachypodium distachyon miR7779-5p 14 20
mmu-miR-6988-3p MIMAT0027879 Mus musculus miR-6988-3p 14 20
hsa-miR-6821-3p MIMAT0027543 Homo sapiens miR-6821-3p 14 20
dps-miR-2552-5p MIMAT0012364 Drosophila pseudoobscura miR-2552-5p 14 20
dps-miR-2550-3p MIMAT0012361 Drosophila pseudoobscura miR-2550-3p 14 20
oan-miR-1421b-5p MIMAT0006965 Ornithorhynchus anatinus miR-1421b-5p 14 20
mdv1-miR-M8-3p MIMAT0003929 Mareks disease miR-M8-3p 14 20
ata-miR167d-3p MIMAT0037233 Aegilops tauschii miR167d-3p 12 80
ata-miR167b-3p MIMAT0037175 Aegilops tauschii miR167b-3p 12 80
bra-miR2111-3p MIMAT0035875 Brassica rapa miR2111-3p 12 80
sly-miR167b-3p MIMAT0035458 Solanum lycopersicum miR167b-3p 12 80
nve-miR-9462 MIMAT0035423 Nematostella vectensis miR-9462 12 80
efu-miR-215 MIMAT0034925 Eptesicus fuscus miR-215 12 80
eca-miR-9098 MIMAT0034645 Equus caballus miR-9098 12 80
pxy-miR-8530-3p MIMAT0033773 Plutella xylostella miR-8530-3p 12 80
ssa-miR-8163-3p MIMAT0032758 Salmo salar miR-8163-3p 12 80
bbe-miR-92d-5p MIMAT0031724 Branchiostoma belcheri miR-92d-5p 12 80
stu-miR169d-3p MIMAT0031366 Solanum tuberosum miR169d-3p 12 80
stu-miR477b-3p MIMAT0031329 Solanum tuberosum miR477b-3p 12 80
stu-miR7991c MIMAT0030867 Solanum tuberosum miR7991c 12 80
stu-miR7991b MIMAT0030866 Solanum tuberosum miR7991b 12 80
stu-miR7991a MIMAT0030865 Solanum tuberosum miR7991a 12 80
prd-miR-7880a-5p MIMAT0030518 Panagrellus redivivus miR-7880a-5p 12 80
bdi-miR167e-3p MIMAT0030092 Brachypodium distachyon miR167e-3p 12 80
gga-miR-7449-5p MIMAT0029052 Gallus gallus miR-7449-5p 12 80
mdo-miR-7394b-3p MIMAT0028895 Monodelphis domestica miR-7394b-3p 12 80
mdo-miR-7396-3p MIMAT0028891 Monodelphis domestica miR-7396-3p 12 80
mdo-miR-7393-3p MIMAT0028885 Monodelphis domestica miR-7393-3p 12 80
mdo-miR-7386c-3p MIMAT0028843 Monodelphis domestica miR-7386c-3p 12 80
mdo-miR-7377-5p MIMAT0028810 Monodelphis domestica miR-7377-5p 12 80
mml-miR-548i-5p MIMAT0028322 Macaca mulatta miR-548i-5p 12 80
mmu-miR-7012-3p MIMAT0027929 Mus musculus miR-7012-3p 12 80
mmu-miR-6915-5p MIMAT0027730 Mus musculus miR-6915-5p 12 80
hsa-miR-6861-3p MIMAT0027624 Homo sapiens miR-6861-3p 12 80
hsa-miR-6759-3p MIMAT0027419 Homo sapiens miR-6759-3p 12 80
ppy-miR-3661 MIMAT0024388 Pongo pygmaeus miR-3661 12 80
osa-miR5807 MIMAT0023279 Oryza sativa miR5807 12 80
sha-miR-125b MIMAT0022810 Sarcophilus harrisii miR-125b 12 80
ola-miR-192-5p MIMAT0022624 Oryzias latipes miR-192-5p 12 80
mmu-miR-5621-5p MIMAT0022369 Mus musculus miR-5621-5p 12 80
aca-miR-5435b-3p MIMAT0022090 Anolis carolinensis miR-5435b-3p 12 80
mtr-miR5217 MIMAT0021175 Medicago truncatula miR5217 12 80
hvu-miR5050 MIMAT0020546 Hordeum vulgare miR5050 12 80
bfl-miR-92d-5p MIMAT0020079 Branchiostoma floridae miR-92d-5p 12 80
hsa-miR-3974 MIMAT0019359 Homo sapiens miR-3974 12 80
oar-miR-3956-3p MIMAT0019291 Ovis aries miR-3956-3p 12 80
hsa-miR-3661 MIMAT0018082 Homo sapiens miR-3661 12 80
cin-miR-4097-3p MIMAT0016679 Ciona intestinalis miR-4097-3p 12 80
ahy-miR3518 MIMAT0016344 Arachis hypogaea miR3518 12 80
aly-miR167d-3p MIMAT0017480 Arabidopsis lyrata miR167d-3p 12 80
aly-miR167c-3p MIMAT0017478 Arabidopsis lyrata miR167c-3p 12 80
eca-miR-1898 MIMAT0013101 Equus caballus miR-1898 12 80
peu-miR2913 MIMAT0012881 Populus euphratica miR2913 12 80
bta-miR-2427 MIMAT0011997 Bos taurus miR-2427 12 80
bta-miR-2323 MIMAT0011852 Bos taurus miR-2323 12 80
nve-miR-2040b-5p MIMAT0009808 Nematostella vectensis miR-2040b-5p 12 80
mmu-miR-1927 MIMAT0009390 Mus musculus miR-1927 12 80
mmu-miR-1898 MIMAT0007875 Mus musculus miR-1898 12 80
cel-miR-1821-3p MIMAT0006588 Caenorhabditis elegans miR-1821-3p 12 80
oan-miR-1421am MIMAT0007313 Ornithorhynchus anatinus miR-1421am 12 80
oan-miR-1361-3p MIMAT0007022 Ornithorhynchus anatinus miR-1361-3p 12 80
oan-miR-1421e-5p MIMAT0006971 Ornithorhynchus anatinus miR-1421e-5p 12 80
cre-miR1166.1 MIMAT0005422 Chlamydomonas reinhardtii miR1166.1 12 80
hiv1-miR-N367 MIMAT0004478 Human immunodeficiency miR-N367 12 80
mdo-miR-125b-1-3p MIMAT0026661 Monodelphis domestica miR-125b-1-3p 12 80
rno-miR-540-3p MIMAT0003174 Rattus norvegicus miR-540-3p 12 80
mmu-miR-540-3p MIMAT0003167 Mus musculus miR-540-3p 12 80
ptc-miR481d MIMAT0002102 Populus trichocarpa miR481d 12 80
ptc-miR481c MIMAT0002100 Populus trichocarpa miR481c 12 80
ptc-miR481b MIMAT0002099 Populus trichocarpa miR481b 12 80
ptc-miR481a MIMAT0002098 Populus trichocarpa miR481a 12 80
osa-miR167h-3p MIMAT0022874 Oryza sativa miR167h-3p 12 80
>ssc-miR-6782-3p MIMAT0037064 Sus scrofa miR-6782-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacctc 7
|||||||
Sbjct: 1 tgacctc 7
>efu-miR-9310 MIMAT0034983 Eptesicus fuscus miR-9310
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacctc 7
|||||||
Sbjct: 1 tgacctc 7
>eca-miR-8933 MIMAT0034462 Equus caballus miR-8933
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacctc 7
|||||||
Sbjct: 7 tgacctc 1
>cfa-miR-8851 MIMAT0034346 Canis familiaris miR-8851
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacctc 7
|||||||
Sbjct: 1 tgacctc 7
>bdi-miR7779-5p MIMAT0030312 Brachypodium distachyon miR7779-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacctc 7
|||||||
Sbjct: 7 tgacctc 1
>mmu-miR-6988-3p MIMAT0027879 Mus musculus miR-6988-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacctc 7
|||||||
Sbjct: 1 tgacctc 7
>hsa-miR-6821-3p MIMAT0027543 Homo sapiens miR-6821-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacctc 7
|||||||
Sbjct: 1 tgacctc 7
>dps-miR-2552-5p MIMAT0012364 Drosophila pseudoobscura
miR-2552-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacctc 7
|||||||
Sbjct: 8 tgacctc 2
>dps-miR-2550-3p MIMAT0012361 Drosophila pseudoobscura
miR-2550-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacctc 7
|||||||
Sbjct: 1 tgacctc 7
>oan-miR-1421b-5p MIMAT0006965 Ornithorhynchus anatinus
miR-1421b-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacctc 7
|||||||
Sbjct: 8 tgacctc 2
>mdv1-miR-M8-3p MIMAT0003929 Mareks disease miR-M8-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacctc 7
|||||||
Sbjct: 2 tgacctc 8
>ata-miR167d-3p MIMAT0037233 Aegilops tauschii miR167d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>ata-miR167b-3p MIMAT0037175 Aegilops tauschii miR167b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>bra-miR2111-3p MIMAT0035875 Brassica rapa miR2111-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacctc 7
||||||
Sbjct: 1 gacctc 6
>sly-miR167b-3p MIMAT0035458 Solanum lycopersicum miR167b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>nve-miR-9462 MIMAT0035423 Nematostella vectensis miR-9462
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>efu-miR-215 MIMAT0034925 Eptesicus fuscus miR-215
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 3 tgacct 8
>eca-miR-9098 MIMAT0034645 Equus caballus miR-9098
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>pxy-miR-8530-3p MIMAT0033773 Plutella xylostella miR-8530-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 8 tgacct 3
>ssa-miR-8163-3p MIMAT0032758 Salmo salar miR-8163-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 8 tgacct 3
>bbe-miR-92d-5p MIMAT0031724 Branchiostoma belcheri miR-92d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>stu-miR169d-3p MIMAT0031366 Solanum tuberosum miR169d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 8 tgacct 3
>stu-miR477b-3p MIMAT0031329 Solanum tuberosum miR477b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 6 gacctc 1
>stu-miR7991c MIMAT0030867 Solanum tuberosum miR7991c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 8 gacctc 3
>stu-miR7991b MIMAT0030866 Solanum tuberosum miR7991b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 8 gacctc 3
>stu-miR7991a MIMAT0030865 Solanum tuberosum miR7991a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 8 gacctc 3
>prd-miR-7880a-5p MIMAT0030518 Panagrellus redivivus
miR-7880a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>bdi-miR167e-3p MIMAT0030092 Brachypodium distachyon miR167e-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>gga-miR-7449-5p MIMAT0029052 Gallus gallus miR-7449-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>mdo-miR-7394b-3p MIMAT0028895 Monodelphis domestica
miR-7394b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 3 tgacct 8
>mdo-miR-7396-3p MIMAT0028891 Monodelphis domestica miR-7396-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>mdo-miR-7393-3p MIMAT0028885 Monodelphis domestica miR-7393-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 3 tgacct 8
>mdo-miR-7386c-3p MIMAT0028843 Monodelphis domestica
miR-7386c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 3 tgacct 8
>mdo-miR-7377-5p MIMAT0028810 Monodelphis domestica miR-7377-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 8 gacctc 3
>mml-miR-548i-5p MIMAT0028322 Macaca mulatta miR-548i-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 8 tgacct 3
>mmu-miR-7012-3p MIMAT0027929 Mus musculus miR-7012-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>mmu-miR-6915-5p MIMAT0027730 Mus musculus miR-6915-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>hsa-miR-6861-3p MIMAT0027624 Homo sapiens miR-6861-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacctc 7
||||||
Sbjct: 3 gacctc 8
>hsa-miR-6759-3p MIMAT0027419 Homo sapiens miR-6759-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>ppy-miR-3661 MIMAT0024388 Pongo pygmaeus miR-3661
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>osa-miR5807 MIMAT0023279 Oryza sativa miR5807
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 8 gacctc 3
>sha-miR-125b MIMAT0022810 Sarcophilus harrisii miR-125b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 8 tgacct 3
>ola-miR-192-5p MIMAT0022624 Oryzias latipes miR-192-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>mmu-miR-5621-5p MIMAT0022369 Mus musculus miR-5621-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 8 gacctc 3
>aca-miR-5435b-3p MIMAT0022090 Anolis carolinensis miR-5435b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 3 tgacct 8
>mtr-miR5217 MIMAT0021175 Medicago truncatula miR5217
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>hvu-miR5050 MIMAT0020546 Hordeum vulgare miR5050
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 8 gacctc 3
>bfl-miR-92d-5p MIMAT0020079 Branchiostoma floridae miR-92d-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>hsa-miR-3974 MIMAT0019359 Homo sapiens miR-3974
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 8 tgacct 3
>oar-miR-3956-3p MIMAT0019291 Ovis aries miR-3956-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 3 tgacct 8
>hsa-miR-3661 MIMAT0018082 Homo sapiens miR-3661
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>cin-miR-4097-3p MIMAT0016679 Ciona intestinalis miR-4097-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>ahy-miR3518 MIMAT0016344 Arachis hypogaea miR3518
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>aly-miR167d-3p MIMAT0017480 Arabidopsis lyrata miR167d-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>aly-miR167c-3p MIMAT0017478 Arabidopsis lyrata miR167c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>eca-miR-1898 MIMAT0013101 Equus caballus miR-1898
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>peu-miR2913 MIMAT0012881 Populus euphratica miR2913
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 6 gacctc 1
>bta-miR-2427 MIMAT0011997 Bos taurus miR-2427
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>bta-miR-2323 MIMAT0011852 Bos taurus miR-2323
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>nve-miR-2040b-5p MIMAT0009808 Nematostella vectensis
miR-2040b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 8 tgacct 3
>mmu-miR-1927 MIMAT0009390 Mus musculus miR-1927
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacctc 7
||||||
Sbjct: 1 gacctc 6
>mmu-miR-1898 MIMAT0007875 Mus musculus miR-1898
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>cel-miR-1821-3p MIMAT0006588 Caenorhabditis elegans miR-1821-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 7 gacctc 2
>oan-miR-1421am MIMAT0007313 Ornithorhynchus anatinus miR-1421am
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 8 gacctc 3
>oan-miR-1361-3p MIMAT0007022 Ornithorhynchus anatinus
miR-1361-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 1 tgacct 6
>oan-miR-1421e-5p MIMAT0006971 Ornithorhynchus anatinus
miR-1421e-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gacctc 7
||||||
Sbjct: 8 gacctc 3
>cre-miR1166.1 MIMAT0005422 Chlamydomonas reinhardtii miR1166.1
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacctc 7
||||||
Sbjct: 3 gacctc 8
>hiv1-miR-N367 MIMAT0004478 Human immunodeficiency miR-N367
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgacct 6
||||||
Sbjct: 3 tgacct 8
>mdo-miR-125b-1-3p MIMAT0026661 Monodelphis domestica
miR-125b-1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 8 tgacct 3
>rno-miR-540-3p MIMAT0003174 Rattus norvegicus miR-540-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>mmu-miR-540-3p MIMAT0003167 Mus musculus miR-540-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
>ptc-miR481d MIMAT0002102 Populus trichocarpa miR481d
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacctc 7
||||||
Sbjct: 3 gacctc 8
>ptc-miR481c MIMAT0002100 Populus trichocarpa miR481c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacctc 7
||||||
Sbjct: 3 gacctc 8
>ptc-miR481b MIMAT0002099 Populus trichocarpa miR481b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacctc 7
||||||
Sbjct: 3 gacctc 8
>ptc-miR481a MIMAT0002098 Populus trichocarpa miR481a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gacctc 7
||||||
Sbjct: 3 gacctc 8
>osa-miR167h-3p MIMAT0022874 Oryza sativa miR167h-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgacct 6
||||||
Sbjct: 6 tgacct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 156
Number of extensions: 145
Number of successful extensions: 76
Number of sequences better than 100.0: 76
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 76
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
