BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s4
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dvi-miR-284-3p MIMAT0008977 Drosophila virilis miR-284-3p 16 6.9
dmo-miR-284 MIMAT0008628 Drosophila mojavensis miR-284 16 6.9
dgr-miR-284 MIMAT0008611 Drosophila grimshawi miR-284 16 6.9
tae-miR9671-5p MIMAT0035787 Triticum aestivum miR9671-5p 14 27
ppc-miR-76-5p MIMAT0033087 Pristionchus pacificus miR-76-5p 14 27
stu-miR8012 MIMAT0030908 Solanum tuberosum miR8012 14 27
hsa-miR-6507-3p MIMAT0025471 Homo sapiens miR-6507-3p 14 27
rno-miR-6325 MIMAT0025064 Rattus norvegicus miR-6325 14 27
cin-miR-4007-5p MIMAT0016486 Ciona intestinalis miR-4007-5p 14 27
ath-miR864-3p MIMAT0004312 Arabidopsis thaliana miR864-3p 14 27
>dvi-miR-284-3p MIMAT0008977 Drosophila virilis miR-284-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tgactttg 8
||||||||
Sbjct: 8 tgactttg 1
>dmo-miR-284 MIMAT0008628 Drosophila mojavensis miR-284
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tgactttg 8
||||||||
Sbjct: 8 tgactttg 1
>dgr-miR-284 MIMAT0008611 Drosophila grimshawi miR-284
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tgactttg 8
||||||||
Sbjct: 8 tgactttg 1
>tae-miR9671-5p MIMAT0035787 Triticum aestivum miR9671-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacttt 7
|||||||
Sbjct: 1 tgacttt 7
>ppc-miR-76-5p MIMAT0033087 Pristionchus pacificus miR-76-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacttt 7
|||||||
Sbjct: 2 tgacttt 8
>stu-miR8012 MIMAT0030908 Solanum tuberosum miR8012
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacttt 7
|||||||
Sbjct: 2 tgacttt 8
>hsa-miR-6507-3p MIMAT0025471 Homo sapiens miR-6507-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gactttg 8
|||||||
Sbjct: 7 gactttg 1
>rno-miR-6325 MIMAT0025064 Rattus norvegicus miR-6325
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacttt 7
|||||||
Sbjct: 7 tgacttt 1
>cin-miR-4007-5p MIMAT0016486 Ciona intestinalis miR-4007-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgacttt 7
|||||||
Sbjct: 2 tgacttt 8
>ath-miR864-3p MIMAT0004312 Arabidopsis thaliana miR864-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgacttt 7
|||||||
Sbjct: 8 tgacttt 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 231
Number of extensions: 218
Number of successful extensions: 169
Number of sequences better than 100.0: 10
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 10
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)