BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-8-loop
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-6571-3p MIMAT0025650 Gallus gallus miR-6571-3p 16 6.9
bra-miR9561-3p MIMAT0035678 Brassica rapa miR9561-3p 14 27
sly-miR477-5p MIMAT0035483 Solanum lycopersicum miR477-5p 14 27
atr-miR8581 MIMAT0033865 Amborella trichopoda miR8581 14 27
hsa-miR-6895-3p MIMAT0027691 Homo sapiens miR-6895-3p 14 27
ath-miR5640 MIMAT0022401 Arabidopsis thaliana miR5640 14 27
gma-miR1513b MIMAT0021008 Glycine max miR1513b 14 27
ame-miR-3717 MIMAT0018512 Apis mellifera miR-3717 14 27
dps-miR-980-5p MIMAT0012223 Drosophila pseudoobscura miR-980-5p 14 27
osa-miR2100-5p MIMAT0010064 Oryza sativa miR2100-5p 14 27
ath-miR1886.1 MIMAT0007853 Arabidopsis thaliana miR1886.1 14 27
gma-miR1513a-5p MIMAT0007371 Glycine max miR1513a-5p 14 27
mmu-miR-741-3p MIMAT0004236 Mus musculus miR-741-3p 14 27
>gga-miR-6571-3p MIMAT0025650 Gallus gallus miR-6571-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgagagac 8
||||||||
Sbjct: 1 tgagagac 8
>bra-miR9561-3p MIMAT0035678 Brassica rapa miR9561-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gagagac 8
|||||||
Sbjct: 1 gagagac 7
>sly-miR477-5p MIMAT0035483 Solanum lycopersicum miR477-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagagac 8
|||||||
Sbjct: 8 gagagac 2
>atr-miR8581 MIMAT0033865 Amborella trichopoda miR8581
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagaga 7
|||||||
Sbjct: 1 tgagaga 7
>hsa-miR-6895-3p MIMAT0027691 Homo sapiens miR-6895-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagagac 8
|||||||
Sbjct: 8 gagagac 2
>ath-miR5640 MIMAT0022401 Arabidopsis thaliana miR5640
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagaga 7
|||||||
Sbjct: 1 tgagaga 7
>gma-miR1513b MIMAT0021008 Glycine max miR1513b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagaga 7
|||||||
Sbjct: 1 tgagaga 7
>ame-miR-3717 MIMAT0018512 Apis mellifera miR-3717
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagaga 7
|||||||
Sbjct: 1 tgagaga 7
>dps-miR-980-5p MIMAT0012223 Drosophila pseudoobscura miR-980-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagagac 8
|||||||
Sbjct: 8 gagagac 2
>osa-miR2100-5p MIMAT0010064 Oryza sativa miR2100-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgagaga 7
|||||||
Sbjct: 8 tgagaga 2
>ath-miR1886.1 MIMAT0007853 Arabidopsis thaliana miR1886.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagaga 7
|||||||
Sbjct: 1 tgagaga 7
>gma-miR1513a-5p MIMAT0007371 Glycine max miR1513a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagaga 7
|||||||
Sbjct: 1 tgagaga 7
>mmu-miR-741-3p MIMAT0004236 Mus musculus miR-741-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagaga 7
|||||||
Sbjct: 1 tgagaga 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 141
Number of extensions: 127
Number of successful extensions: 109
Number of sequences better than 100.0: 13
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 13
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)