BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sa12-2785
         (8 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mdo-miR-7337-5p MIMAT0028682 Monodelphis domestica miR-7337-5p         16   6.9  
smo-miR1081 MIMAT0005231 Selaginella moellendorffii miR1081            16   6.9  
eca-miR-2114 MIMAT0034714 Equus caballus miR-2114                      14      27
eca-miR-9129 MIMAT0034680 Equus caballus miR-9129                      14      27
ppc-miR-8315-2-5p MIMAT0033171 Pristionchus pacificus miR-8315-2-5p    14      27
hsa-miR-7109-3p MIMAT0028116 Homo sapiens miR-7109-3p                  14      27
mmu-miR-7068-5p MIMAT0028042 Mus musculus miR-7068-5p                  14      27
hsa-miR-6819-3p MIMAT0027539 Homo sapiens miR-6819-3p                  14      27
ppy-miR-3188 MIMAT0024401 Pongo pygmaeus miR-3188                      14      27
hco-miR-5911c MIMAT0023397 Haemonchus contortus miR-5911c              14      27
gma-miR5766 MIMAT0023163 Glycine max miR5766                           14      27
hsa-miR-2467-5p MIMAT0019952 Homo sapiens miR-2467-5p                  14      27
hsa-miR-3975 MIMAT0019360 Homo sapiens miR-3975                        14      27
smr-miR-282 MIMAT0018915 Strigamia maritima miR-282                    14      27
ame-miR-3747a MIMAT0018515 Apis mellifera miR-3747a                    14      27
hsa-miR-3188 MIMAT0015070 Homo sapiens miR-3188                        14      27
bmo-miR-2760-5p MIMAT0013632 Bombyx mori miR-2760-5p                   14      27
cel-miR-1833 MIMAT0006775 Caenorhabditis elegans miR-1833              14      27
rno-miR-879-5p MIMAT0005287 Rattus norvegicus miR-879-5p               14      27
mmu-miR-879-5p MIMAT0004842 Mus musculus miR-879-5p                    14      27
>mdo-miR-7337-5p MIMAT0028682 Monodelphis domestica miR-7337-5p
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Minus

                 
Query: 1 tgaggctt 8
         ||||||||
Sbjct: 8 tgaggctt 1
>smo-miR1081 MIMAT0005231 Selaginella moellendorffii miR1081
          Length = 8

 Score = 16.4 bits (8), Expect = 6.9
 Identities = 8/8 (100%)
 Strand = Plus / Plus

                 
Query: 1 tgaggctt 8
         ||||||||
Sbjct: 1 tgaggctt 8
>eca-miR-2114 MIMAT0034714 Equus caballus miR-2114
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgaggct 7
         |||||||
Sbjct: 7 tgaggct 1
>eca-miR-9129 MIMAT0034680 Equus caballus miR-9129
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgaggct 7
         |||||||
Sbjct: 1 tgaggct 7
>ppc-miR-8315-2-5p MIMAT0033171 Pristionchus pacificus
         miR-8315-2-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgaggct 7
         |||||||
Sbjct: 7 tgaggct 1
>hsa-miR-7109-3p MIMAT0028116 Homo sapiens miR-7109-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gaggctt 8
         |||||||
Sbjct: 8 gaggctt 2
>mmu-miR-7068-5p MIMAT0028042 Mus musculus miR-7068-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgaggct 7
         |||||||
Sbjct: 2 tgaggct 8
>hsa-miR-6819-3p MIMAT0027539 Homo sapiens miR-6819-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gaggctt 8
         |||||||
Sbjct: 7 gaggctt 1
>ppy-miR-3188 MIMAT0024401 Pongo pygmaeus miR-3188
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gaggctt 8
         |||||||
Sbjct: 2 gaggctt 8
>hco-miR-5911c MIMAT0023397 Haemonchus contortus miR-5911c
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgaggct 7
         |||||||
Sbjct: 1 tgaggct 7
>gma-miR5766 MIMAT0023163 Glycine max miR5766
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgaggct 7
         |||||||
Sbjct: 2 tgaggct 8
>hsa-miR-2467-5p MIMAT0019952 Homo sapiens miR-2467-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgaggct 7
         |||||||
Sbjct: 1 tgaggct 7
>hsa-miR-3975 MIMAT0019360 Homo sapiens miR-3975
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgaggct 7
         |||||||
Sbjct: 1 tgaggct 7
>smr-miR-282 MIMAT0018915 Strigamia maritima miR-282
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 2 gaggctt 8
         |||||||
Sbjct: 7 gaggctt 1
>ame-miR-3747a MIMAT0018515 Apis mellifera miR-3747a
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gaggctt 8
         |||||||
Sbjct: 2 gaggctt 8
>hsa-miR-3188 MIMAT0015070 Homo sapiens miR-3188
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gaggctt 8
         |||||||
Sbjct: 2 gaggctt 8
>bmo-miR-2760-5p MIMAT0013632 Bombyx mori miR-2760-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gaggctt 8
         |||||||
Sbjct: 2 gaggctt 8
>cel-miR-1833 MIMAT0006775 Caenorhabditis elegans miR-1833
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gaggctt 8
         |||||||
Sbjct: 2 gaggctt 8
>rno-miR-879-5p MIMAT0005287 Rattus norvegicus miR-879-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gaggctt 8
         |||||||
Sbjct: 2 gaggctt 8
>mmu-miR-879-5p MIMAT0004842 Mus musculus miR-879-5p
          Length = 8

 Score = 14.4 bits (7), Expect =    27
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 2 gaggctt 8
         |||||||
Sbjct: 2 gaggctt 8
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 144
Number of extensions: 122
Number of successful extensions: 84
Number of sequences better than 100.0: 20
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 20
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space:   573248
Effective search space used:   573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)