BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-5-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
prv-miR-LLT5 MIMAT0025308 Pseudorabies virus miR-LLT5 16 6.9
ata-miR9677-5p MIMAT0037224 Aegilops tauschii miR9677-5p 14 27
efu-miR-9186j MIMAT0035143 Eptesicus fuscus miR-9186j 14 27
eca-miR-9034 MIMAT0034576 Equus caballus miR-9034 14 27
mmu-miR-7687-3p MIMAT0029903 Mus musculus miR-7687-3p 14 27
mmu-miR-6956-5p MIMAT0027812 Mus musculus miR-6956-5p 14 27
hsa-miR-6849-5p MIMAT0027598 Homo sapiens miR-6849-5p 14 27
hsa-miR-6777-3p MIMAT0027455 Homo sapiens miR-6777-3p 14 27
cgr-miR-702 MIMAT0024000 Cricetulus griseus miR-702 14 27
hco-miR-5927 MIMAT0023408 Haemonchus contortus miR-5927 14 27
hsa-miR-4758-5p MIMAT0019903 Homo sapiens miR-4758-5p 14 27
hsa-miR-4745-5p MIMAT0019878 Homo sapiens miR-4745-5p 14 27
dme-miR-3642-5p MIMAT0018057 Drosophila melanogaster miR-3642-5p 14 27
cin-miR-4165-3p MIMAT0016773 Ciona intestinalis miR-4165-3p 14 27
rno-miR-702-5p MIMAT0017884 Rattus norvegicus miR-702-5p 14 27
mmu-miR-3102-5p MIMAT0014933 Mus musculus miR-3102-5p 14 27
dps-miR-2571-5p MIMAT0012412 Drosophila pseudoobscura miR-2571-5p 14 27
dps-miR-2546-5p MIMAT0012352 Drosophila pseudoobscura miR-2546-5p 14 27
sme-miR-1175-5p MIMAT0012147 Schmidtea mediterranea miR-1175-5p 14 27
hsa-miR-1238-5p MIMAT0022947 Homo sapiens miR-1238-5p 14 27
mmu-miR-702-5p MIMAT0022931 Mus musculus miR-702-5p 14 27
>prv-miR-LLT5 MIMAT0025308 Pseudorabies virus miR-LLT5
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgagtgga 8
||||||||
Sbjct: 1 tgagtgga 8
>ata-miR9677-5p MIMAT0037224 Aegilops tauschii miR9677-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgga 8
|||||||
Sbjct: 8 gagtgga 2
>efu-miR-9186j MIMAT0035143 Eptesicus fuscus miR-9186j
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 1 tgagtgg 7
>eca-miR-9034 MIMAT0034576 Equus caballus miR-9034
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgagtgg 7
|||||||
Sbjct: 7 tgagtgg 1
>mmu-miR-7687-3p MIMAT0029903 Mus musculus miR-7687-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgagtgg 7
|||||||
Sbjct: 7 tgagtgg 1
>mmu-miR-6956-5p MIMAT0027812 Mus musculus miR-6956-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 1 tgagtgg 7
>hsa-miR-6849-5p MIMAT0027598 Homo sapiens miR-6849-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gagtgga 8
|||||||
Sbjct: 1 gagtgga 7
>hsa-miR-6777-3p MIMAT0027455 Homo sapiens miR-6777-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gagtgga 8
|||||||
Sbjct: 7 gagtgga 1
>cgr-miR-702 MIMAT0024000 Cricetulus griseus miR-702
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 2 tgagtgg 8
>hco-miR-5927 MIMAT0023408 Haemonchus contortus miR-5927
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgagtgg 7
|||||||
Sbjct: 8 tgagtgg 2
>hsa-miR-4758-5p MIMAT0019903 Homo sapiens miR-4758-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 2 tgagtgg 8
>hsa-miR-4745-5p MIMAT0019878 Homo sapiens miR-4745-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 1 tgagtgg 7
>dme-miR-3642-5p MIMAT0018057 Drosophila melanogaster
miR-3642-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 2 tgagtgg 8
>cin-miR-4165-3p MIMAT0016773 Ciona intestinalis miR-4165-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 1 tgagtgg 7
>rno-miR-702-5p MIMAT0017884 Rattus norvegicus miR-702-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 2 tgagtgg 8
>mmu-miR-3102-5p MIMAT0014933 Mus musculus miR-3102-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 2 tgagtgg 8
>dps-miR-2571-5p MIMAT0012412 Drosophila pseudoobscura
miR-2571-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 2 tgagtgg 8
>dps-miR-2546-5p MIMAT0012352 Drosophila pseudoobscura
miR-2546-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 2 tgagtgg 8
>sme-miR-1175-5p MIMAT0012147 Schmidtea mediterranea miR-1175-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gagtgga 8
|||||||
Sbjct: 1 gagtgga 7
>hsa-miR-1238-5p MIMAT0022947 Homo sapiens miR-1238-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 2 tgagtgg 8
>mmu-miR-702-5p MIMAT0022931 Mus musculus miR-702-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgagtgg 7
|||||||
Sbjct: 2 tgagtgg 8
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 174
Number of extensions: 152
Number of successful extensions: 119
Number of sequences better than 100.0: 21
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 21
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
