BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-7
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gga-miR-6590-5p MIMAT0025682 Gallus gallus miR-6590-5p 16 6.9
kshv-miR-K12-7-3p MIMAT0002187 Kaposi sarcoma-associated miR-K12... 16 6.9
ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p 14 27
cfa-miR-769 MIMAT0034400 Canis familiaris miR-769 14 27
ppc-miR-8236-5p MIMAT0032926 Pristionchus pacificus miR-8236-5p 14 27
prd-miR-7935-5p MIMAT0030726 Panagrellus redivivus miR-7935-5p 14 27
prd-miR-7881-5p MIMAT0030520 Panagrellus redivivus miR-7881-5p 14 27
cbn-miR-7635 MIMAT0029678 Caenorhabditis brenneri miR-7635 14 27
crm-miR-7599 MIMAT0029616 Caenorhabditis remanei miR-7599 14 27
ghr-miR7491 MIMAT0029133 Gossypium hirsutum miR7491 14 27
mml-miR-769-3p MIMAT0028335 Macaca mulatta miR-769-3p 14 27
mml-miR-7177-3p MIMAT0028299 Macaca mulatta miR-7177-3p 14 27
mse-miR-450 MIMAT0024497 Manduca sexta miR-450 14 27
mtr-miR5206b MIMAT0023152 Medicago truncatula miR5206b 14 27
mtr-miR5206a MIMAT0021137 Medicago truncatula miR5206a 14 27
cel-miR-4932 MIMAT0020138 Caenorhabditis elegans miR-4932 14 27
hsa-miR-4713-3p MIMAT0019821 Homo sapiens miR-4713-3p 14 27
cin-miR-4045-3p MIMAT0016580 Ciona intestinalis miR-4045-3p 14 27
ppy-miR-450b-3p MIMAT0015895 Pongo pygmaeus miR-450b-3p 14 27
ssc-miR-769-3p MIMAT0013958 Sus scrofa miR-769-3p 14 27
eca-miR-769a-3p MIMAT0013016 Equus caballus miR-769a-3p 14 27
dme-miR-2492-5p MIMAT0020913 Drosophila melanogaster miR-2492-5p 14 27
ptr-miR-450b MIMAT0008152 Pan troglodytes miR-450b 14 27
mml-miR-450b-3p MIMAT0006334 Macaca mulatta miR-450b-3p 14 27
hsa-miR-450b-3p MIMAT0004910 Homo sapiens miR-450b-3p 14 27
hsa-miR-769-3p MIMAT0003887 Homo sapiens miR-769-3p 14 27
>gga-miR-6590-5p MIMAT0025682 Gallus gallus miR-6590-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tgatccca 8
||||||||
Sbjct: 8 tgatccca 1
>kshv-miR-K12-7-3p MIMAT0002187 Kaposi sarcoma-associated
miR-K12-7-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgatccca 8
||||||||
Sbjct: 1 tgatccca 8
>ssc-miR-9852-3p MIMAT0037071 Sus scrofa miR-9852-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 7 gatccca 1
>cfa-miR-769 MIMAT0034400 Canis familiaris miR-769
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
>ppc-miR-8236-5p MIMAT0032926 Pristionchus pacificus miR-8236-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgatccc 7
|||||||
Sbjct: 7 tgatccc 1
>prd-miR-7935-5p MIMAT0030726 Panagrellus redivivus miR-7935-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatccc 7
|||||||
Sbjct: 2 tgatccc 8
>prd-miR-7881-5p MIMAT0030520 Panagrellus redivivus miR-7881-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatccc 7
|||||||
Sbjct: 1 tgatccc 7
>cbn-miR-7635 MIMAT0029678 Caenorhabditis brenneri miR-7635
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 7 gatccca 1
>crm-miR-7599 MIMAT0029616 Caenorhabditis remanei miR-7599
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 7 gatccca 1
>ghr-miR7491 MIMAT0029133 Gossypium hirsutum miR7491
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 7 gatccca 1
>mml-miR-769-3p MIMAT0028335 Macaca mulatta miR-769-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 7 gatccca 1
>mml-miR-7177-3p MIMAT0028299 Macaca mulatta miR-7177-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatccc 7
|||||||
Sbjct: 2 tgatccc 8
>mse-miR-450 MIMAT0024497 Manduca sexta miR-450
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgatccc 7
|||||||
Sbjct: 7 tgatccc 1
>mtr-miR5206b MIMAT0023152 Medicago truncatula miR5206b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
>mtr-miR5206a MIMAT0021137 Medicago truncatula miR5206a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
>cel-miR-4932 MIMAT0020138 Caenorhabditis elegans miR-4932
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgatccc 7
|||||||
Sbjct: 8 tgatccc 2
>hsa-miR-4713-3p MIMAT0019821 Homo sapiens miR-4713-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 7 gatccca 1
>cin-miR-4045-3p MIMAT0016580 Ciona intestinalis miR-4045-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgatccc 7
|||||||
Sbjct: 8 tgatccc 2
>ppy-miR-450b-3p MIMAT0015895 Pongo pygmaeus miR-450b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
>ssc-miR-769-3p MIMAT0013958 Sus scrofa miR-769-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
>eca-miR-769a-3p MIMAT0013016 Equus caballus miR-769a-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
>dme-miR-2492-5p MIMAT0020913 Drosophila melanogaster
miR-2492-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
>ptr-miR-450b MIMAT0008152 Pan troglodytes miR-450b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
>mml-miR-450b-3p MIMAT0006334 Macaca mulatta miR-450b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
>hsa-miR-450b-3p MIMAT0004910 Homo sapiens miR-450b-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
>hsa-miR-769-3p MIMAT0003887 Homo sapiens miR-769-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatccca 8
|||||||
Sbjct: 8 gatccca 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 162
Number of extensions: 134
Number of successful extensions: 113
Number of sequences better than 100.0: 26
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 26
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
