BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rlcv-miR-rl1-17-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rlcv-miR-rL1-17-5p MIMAT0019185 Rhesus lymphocryptovirus miR-rL1... 16 6.9
gra-miR8752 MIMAT0034179 Gossypium raimondii miR8752 14 27
str-miR-7880n-5p MIMAT0033368 Strongyloides ratti miR-7880n-5p 14 27
hsa-miR-8082 MIMAT0031009 Homo sapiens miR-8082 14 27
stu-miR8048-3p MIMAT0030972 Solanum tuberosum miR8048-3p 14 27
gga-miR-7468-3p MIMAT0029091 Gallus gallus miR-7468-3p 14 27
gga-miR-6589-5p MIMAT0025681 Gallus gallus miR-6589-5p 14 27
gga-miR-6572-3p MIMAT0025652 Gallus gallus miR-6572-3p 14 27
mtr-miR5298c MIMAT0021371 Medicago truncatula miR5298c 14 27
mtr-miR5298b MIMAT0021370 Medicago truncatula miR5298b 14 27
aly-miR842-5p MIMAT0017627 Arabidopsis lyrata miR842-5p 14 27
hsa-miR-3134 MIMAT0015000 Homo sapiens miR-3134 14 27
dps-miR-2527 MIMAT0012317 Drosophila pseudoobscura miR-2527 14 27
sme-miR-2171 MIMAT0011271 Schmidtea mediterranea miR-2171 14 27
oan-miR-1400-5p MIMAT0007205 Ornithorhynchus anatinus miR-1400-5p 14 27
cre-miR1170.1 MIMAT0005429 Chlamydomonas reinhardtii miR1170.1 14 27
>rlcv-miR-rL1-17-5p MIMAT0019185 Rhesus lymphocryptovirus
miR-rL1-17-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgatggac 8
||||||||
Sbjct: 1 tgatggac 8
>gra-miR8752 MIMAT0034179 Gossypium raimondii miR8752
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 1 tgatgga 7
>str-miR-7880n-5p MIMAT0033368 Strongyloides ratti miR-7880n-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 1 tgatgga 7
>hsa-miR-8082 MIMAT0031009 Homo sapiens miR-8082
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 1 tgatgga 7
>stu-miR8048-3p MIMAT0030972 Solanum tuberosum miR8048-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggac 8
|||||||
Sbjct: 2 gatggac 8
>gga-miR-7468-3p MIMAT0029091 Gallus gallus miR-7468-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 1 tgatgga 7
>gga-miR-6589-5p MIMAT0025681 Gallus gallus miR-6589-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 1 tgatgga 7
>gga-miR-6572-3p MIMAT0025652 Gallus gallus miR-6572-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggac 8
|||||||
Sbjct: 2 gatggac 8
>mtr-miR5298c MIMAT0021371 Medicago truncatula miR5298c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 1 tgatgga 7
>mtr-miR5298b MIMAT0021370 Medicago truncatula miR5298b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 1 tgatgga 7
>aly-miR842-5p MIMAT0017627 Arabidopsis lyrata miR842-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 2 tgatgga 8
>hsa-miR-3134 MIMAT0015000 Homo sapiens miR-3134
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 1 tgatgga 7
>dps-miR-2527 MIMAT0012317 Drosophila pseudoobscura miR-2527
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 1 tgatgga 7
>sme-miR-2171 MIMAT0011271 Schmidtea mediterranea miR-2171
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatgga 7
|||||||
Sbjct: 2 tgatgga 8
>oan-miR-1400-5p MIMAT0007205 Ornithorhynchus anatinus
miR-1400-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggac 8
|||||||
Sbjct: 1 gatggac 7
>cre-miR1170.1 MIMAT0005429 Chlamydomonas reinhardtii miR1170.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatggac 8
|||||||
Sbjct: 8 gatggac 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 110
Number of extensions: 93
Number of successful extensions: 75
Number of sequences better than 100.0: 16
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 16
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
