BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= kshv-miR-k12-6-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
eca-miR-9044 MIMAT0034587 Equus caballus miR-9044 16 6.9
kshv-miR-K12-6-3p MIMAT0002189 Kaposi sarcoma-associated miR-K12... 16 6.9
gsa-miR-7-3p MIMAT0035283 Gyrodactylus salaris miR-7-3p 14 27
efu-miR-181a MIMAT0035054 Eptesicus fuscus miR-181a 14 27
gra-miR8770 MIMAT0034208 Gossypium raimondii miR8770 14 27
hsa-miR-8069 MIMAT0030996 Homo sapiens miR-8069 14 27
esi-miR3466-3p MIMAT0017750 Ectocarpus siliculosus miR3466-3p 14 27
ppt-miR1216 MIMAT0003905 Physcomitrella patens miR1216 14 27
hsa-miR-758-5p MIMAT0022929 Homo sapiens miR-758-5p 14 27
hsa-miR-181c-3p MIMAT0004559 Homo sapiens miR-181c-3p 14 27
cel-miR-77-5p MIMAT0020774 Caenorhabditis elegans miR-77-5p 14 27
>eca-miR-9044 MIMAT0034587 Equus caballus miR-9044
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgatggtt 8
||||||||
Sbjct: 1 tgatggtt 8
>kshv-miR-K12-6-3p MIMAT0002189 Kaposi sarcoma-associated
miR-K12-6-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgatggtt 8
||||||||
Sbjct: 1 tgatggtt 8
>gsa-miR-7-3p MIMAT0035283 Gyrodactylus salaris miR-7-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatggtt 8
|||||||
Sbjct: 8 gatggtt 2
>efu-miR-181a MIMAT0035054 Eptesicus fuscus miR-181a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatggtt 8
|||||||
Sbjct: 7 gatggtt 1
>gra-miR8770 MIMAT0034208 Gossypium raimondii miR8770
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatggt 7
|||||||
Sbjct: 2 tgatggt 8
>hsa-miR-8069 MIMAT0030996 Homo sapiens miR-8069
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggtt 8
|||||||
Sbjct: 2 gatggtt 8
>esi-miR3466-3p MIMAT0017750 Ectocarpus siliculosus miR3466-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatggt 7
|||||||
Sbjct: 1 tgatggt 7
>ppt-miR1216 MIMAT0003905 Physcomitrella patens miR1216
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgatggt 7
|||||||
Sbjct: 1 tgatggt 7
>hsa-miR-758-5p MIMAT0022929 Homo sapiens miR-758-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggtt 8
|||||||
Sbjct: 1 gatggtt 7
>hsa-miR-181c-3p MIMAT0004559 Homo sapiens miR-181c-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gatggtt 8
|||||||
Sbjct: 7 gatggtt 1
>cel-miR-77-5p MIMAT0020774 Caenorhabditis elegans miR-77-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gatggtt 8
|||||||
Sbjct: 1 gatggtt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 151
Number of extensions: 138
Number of successful extensions: 122
Number of sequences better than 100.0: 11
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 11
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
