BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mdv1-miR-m12-3p_ 1_5
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
bmo-miR-3371 MIMAT0015558 Bombyx mori miR-3371 16 6.9
oan-miR-1421ah-3p MIMAT0007304 Ornithorhynchus anatinus miR-1421... 16 6.9
mdv1-miR-M12-3p MIMAT0005984 Mareks disease miR-M12-3p 16 6.9
tae-miR9779 MIMAT0036993 Triticum aestivum miR9779 14 27
chi-miR-491-3p MIMAT0036252 Capra hircus miR-491-3p 14 27
gsa-miR-1993-3p MIMAT0035301 Gyrodactylus salaris miR-1993-3p 14 27
sma-miR-2162-3p MIMAT0033666 Schistosoma mansoni miR-2162-3p 14 27
str-miR-8378-3p MIMAT0033409 Strongyloides ratti miR-8378-3p 14 27
prd-miR-60-3p MIMAT0030589 Panagrellus redivivus miR-60-3p 14 27
cbn-miR-60 MIMAT0029774 Caenorhabditis brenneri miR-60 14 27
hme-miR-2763 MIMAT0024955 Heliconius melpomene miR-2763 14 27
hco-miR-60 MIMAT0023468 Haemonchus contortus miR-60 14 27
mtr-miR5231 MIMAT0021216 Medicago truncatula miR5231 14 27
isc-miR-1993 MIMAT0016929 Ixodes scapularis miR-1993 14 27
sja-miR-2162-3p MIMAT0016273 Schistosoma japonicum miR-2162-3p 14 27
ppy-miR-491-3p MIMAT0015912 Pongo pygmaeus miR-491-3p 14 27
eca-miR-491-3p MIMAT0013117 Equus caballus miR-491-3p 14 27
bmo-miR-2763-3p MIMAT0013638 Bombyx mori miR-2763-3p 14 27
crm-miR-60-3p MIMAT0011562 Caenorhabditis remanei miR-60-3p 14 27
sme-miR-1993-3p MIMAT0011241 Schmidtea mediterranea miR-1993-3p 14 27
lgi-miR-1993 MIMAT0009723 Lottia gigantea miR-1993 14 27
cte-miR-1993 MIMAT0009701 Capitella teleta miR-1993 14 27
ptr-miR-491 MIMAT0008166 Pan troglodytes miR-491 14 27
cfa-miR-491 MIMAT0006601 Canis familiaris miR-491 14 27
mml-miR-491-3p MIMAT0006353 Macaca mulatta miR-491-3p 14 27
sme-miR-1b-5p MIMAT0012091 Schmidtea mediterranea miR-1b-5p 14 27
mmu-miR-491-3p MIMAT0017255 Mus musculus miR-491-3p 14 27
hsa-miR-491-3p MIMAT0004765 Homo sapiens miR-491-3p 14 27
cbr-miR-60 MIMAT0000479 Caenorhabditis briggsae miR-60 14 27
cel-miR-60-3p MIMAT0000032 Caenorhabditis elegans miR-60-3p 14 27
>bmo-miR-3371 MIMAT0015558 Bombyx mori miR-3371
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcataat 8
||||||||
Sbjct: 1 tgcataat 8
>oan-miR-1421ah-3p MIMAT0007304 Ornithorhynchus anatinus
miR-1421ah-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcataat 8
||||||||
Sbjct: 1 tgcataat 8
>mdv1-miR-M12-3p MIMAT0005984 Mareks disease miR-M12-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcataat 8
||||||||
Sbjct: 1 tgcataat 8
>tae-miR9779 MIMAT0036993 Triticum aestivum miR9779
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcataa 7
|||||||
Sbjct: 8 tgcataa 2
>chi-miR-491-3p MIMAT0036252 Capra hircus miR-491-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcataa 7
|||||||
Sbjct: 8 tgcataa 2
>gsa-miR-1993-3p MIMAT0035301 Gyrodactylus salaris miR-1993-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>sma-miR-2162-3p MIMAT0033666 Schistosoma mansoni miR-2162-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>str-miR-8378-3p MIMAT0033409 Strongyloides ratti miR-8378-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>prd-miR-60-3p MIMAT0030589 Panagrellus redivivus miR-60-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>cbn-miR-60 MIMAT0029774 Caenorhabditis brenneri miR-60
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>hme-miR-2763 MIMAT0024955 Heliconius melpomene miR-2763
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>hco-miR-60 MIMAT0023468 Haemonchus contortus miR-60
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>mtr-miR5231 MIMAT0021216 Medicago truncatula miR5231
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcataa 7
|||||||
Sbjct: 7 tgcataa 1
>isc-miR-1993 MIMAT0016929 Ixodes scapularis miR-1993
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>sja-miR-2162-3p MIMAT0016273 Schistosoma japonicum miR-2162-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>ppy-miR-491-3p MIMAT0015912 Pongo pygmaeus miR-491-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcataa 7
|||||||
Sbjct: 8 tgcataa 2
>eca-miR-491-3p MIMAT0013117 Equus caballus miR-491-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcataa 7
|||||||
Sbjct: 8 tgcataa 2
>bmo-miR-2763-3p MIMAT0013638 Bombyx mori miR-2763-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>crm-miR-60-3p MIMAT0011562 Caenorhabditis remanei miR-60-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>sme-miR-1993-3p MIMAT0011241 Schmidtea mediterranea miR-1993-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>lgi-miR-1993 MIMAT0009723 Lottia gigantea miR-1993
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>cte-miR-1993 MIMAT0009701 Capitella teleta miR-1993
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>ptr-miR-491 MIMAT0008166 Pan troglodytes miR-491
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcataa 7
|||||||
Sbjct: 8 tgcataa 2
>cfa-miR-491 MIMAT0006601 Canis familiaris miR-491
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcataa 7
|||||||
Sbjct: 8 tgcataa 2
>mml-miR-491-3p MIMAT0006353 Macaca mulatta miR-491-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcataa 7
|||||||
Sbjct: 8 tgcataa 2
>sme-miR-1b-5p MIMAT0012091 Schmidtea mediterranea miR-1b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gcataat 8
|||||||
Sbjct: 2 gcataat 8
>mmu-miR-491-3p MIMAT0017255 Mus musculus miR-491-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcataa 7
|||||||
Sbjct: 8 tgcataa 2
>hsa-miR-491-3p MIMAT0004765 Homo sapiens miR-491-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcataa 7
|||||||
Sbjct: 8 tgcataa 2
>cbr-miR-60 MIMAT0000479 Caenorhabditis briggsae miR-60
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
>cel-miR-60-3p MIMAT0000032 Caenorhabditis elegans miR-60-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcataat 8
|||||||
Sbjct: 8 gcataat 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 192
Number of extensions: 159
Number of successful extensions: 88
Number of sequences better than 100.0: 30
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 30
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
