BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prv-miR-10-1
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ssa-miR-130b-2-5p MIMAT0032326 Salmo salar miR-130b-2-5p 14 20
mmu-miR-6953-5p MIMAT0027806 Mus musculus miR-6953-5p 14 20
hsa-miR-6743-5p MIMAT0027387 Homo sapiens miR-6743-5p 14 20
hsa-miR-4688 MIMAT0019777 Homo sapiens miR-4688 14 20
pma-miR-4620 MIMAT0019654 Petromyzon marinus miR-4620 14 20
pma-miR-4601 MIMAT0019635 Petromyzon marinus miR-4601 14 20
xtr-miR-202-3p MIMAT0003621 Xenopus tropicalis miR-202-3p 14 20
ata-miR9772b-3p MIMAT0037155 Aegilops tauschii miR9772b-3p 12 80
ata-miR9772a-3p MIMAT0037107 Aegilops tauschii miR9772a-3p 12 80
chi-miR-423-5p MIMAT0036220 Capra hircus miR-423-5p 12 80
chi-miR-324-3p MIMAT0036136 Capra hircus miR-324-3p 12 80
efu-miR-331 MIMAT0035148 Eptesicus fuscus miR-331 12 80
efu-miR-423 MIMAT0035024 Eptesicus fuscus miR-423 12 80
efu-miR-9318b MIMAT0035023 Eptesicus fuscus miR-9318b 12 80
eca-miR-9163 MIMAT0034740 Equus caballus miR-9163 12 80
eca-miR-8952 MIMAT0034481 Equus caballus miR-8952 12 80
cfa-miR-8794 MIMAT0034284 Canis familiaris miR-8794 12 80
gra-miR8701 MIMAT0034082 Gossypium raimondii miR8701 12 80
gra-miR8637 MIMAT0033987 Gossypium raimondii miR8637 12 80
pxy-miR-8498 MIMAT0033708 Plutella xylostella miR-8498 12 80
pxy-miR-8495-3p MIMAT0033705 Plutella xylostella miR-8495-3p 12 80
str-miR-7880u-5p MIMAT0033406 Strongyloides ratti miR-7880u-5p 12 80
ppc-miR-8255-5p MIMAT0032978 Pristionchus pacificus miR-8255-5p 12 80
ssa-miR-365-2-5p MIMAT0032624 Salmo salar miR-365-2-5p 12 80
ssa-miR-130d-3-5p MIMAT0032330 Salmo salar miR-130d-3-5p 12 80
ssa-miR-130b-5p MIMAT0032324 Salmo salar miR-130b-5p 12 80
mmu-miR-7653-5p MIMAT0029812 Mus musculus miR-7653-5p 12 80
aja-miR-331 MIMAT0031150 Artibeus jamaicensis miR-331 12 80
mdo-miR-7283-5p MIMAT0028540 Monodelphis domestica miR-7283-5p 12 80
mdo-miR-7280-3p MIMAT0028535 Monodelphis domestica miR-7280-3p 12 80
mml-miR-7184-5p MIMAT0028320 Macaca mulatta miR-7184-5p 12 80
mmu-miR-6982-3p MIMAT0027867 Mus musculus miR-6982-3p 12 80
mmu-miR-6921-5p MIMAT0027742 Mus musculus miR-6921-5p 12 80
mmu-miR-6897-5p MIMAT0027694 Mus musculus miR-6897-5p 12 80
hsa-miR-6789-5p MIMAT0027478 Homo sapiens miR-6789-5p 12 80
hsa-miR-6775-5p MIMAT0027450 Homo sapiens miR-6775-5p 12 80
hsa-miR-6769a-3p MIMAT0027439 Homo sapiens miR-6769a-3p 12 80
rno-miR-3072 MIMAT0025071 Rattus norvegicus miR-3072 12 80
ggo-miR-331 MIMAT0024128 Gorilla gorilla miR-331 12 80
ggo-miR-423 MIMAT0024085 Gorilla gorilla miR-423 12 80
cgr-miR-423-5p MIMAT0023956 Cricetulus griseus miR-423-5p 12 80
cgr-miR-331-3p MIMAT0023917 Cricetulus griseus miR-331-3p 12 80
cgr-miR-3072-3p MIMAT0023893 Cricetulus griseus miR-3072-3p 12 80
cgr-miR-185-3p MIMAT0023812 Cricetulus griseus miR-185-3p 12 80
hco-miR-2159-3p MIMAT0023509 Haemonchus contortus miR-2159-3p 12 80
hsa-miR-5699-5p MIMAT0027103 Homo sapiens miR-5699-5p 12 80
osa-miR5486 MIMAT0022119 Oryza sativa miR5486 12 80
mtr-miR5273 MIMAT0021308 Medicago truncatula miR5273 12 80
hsa-miR-5090 MIMAT0021082 Homo sapiens miR-5090 12 80
hsa-miR-4758-3p MIMAT0019904 Homo sapiens miR-4758-3p 12 80
pab-miR3697 MIMAT0018129 Picea abies miR3697 12 80
cin-miR-4116-5p MIMAT0016707 Ciona intestinalis miR-4116-5p 12 80
cin-miR-4008c-3p MIMAT0016500 Ciona intestinalis miR-4008c-3p 12 80
rno-miR-3573-5p MIMAT0017856 Rattus norvegicus miR-3573-5p 12 80
rno-miR-3562 MIMAT0017832 Rattus norvegicus miR-3562 12 80
gga-miR-3528 MIMAT0016377 Gallus gallus miR-3528 12 80
ppy-miR-1913 MIMAT0016241 Pongo pygmaeus miR-1913 12 80
ppy-miR-423-5p MIMAT0015882 Pongo pygmaeus miR-423-5p 12 80
ppy-miR-331-3p MIMAT0015836 Pongo pygmaeus miR-331-3p 12 80
ppy-miR-324-3p MIMAT0015828 Pongo pygmaeus miR-324-3p 12 80
hsa-miR-3189-5p MIMAT0019217 Homo sapiens miR-3189-5p 12 80
hsa-miR-3184-5p MIMAT0015064 Homo sapiens miR-3184-5p 12 80
mmu-miR-3072-3p MIMAT0014853 Mus musculus miR-3072-3p 12 80
ssc-miR-331-3p MIMAT0013930 Sus scrofa miR-331-3p 12 80
ssc-miR-423-5p MIMAT0013880 Sus scrofa miR-423-5p 12 80
eca-miR-331 MIMAT0013188 Equus caballus miR-331 12 80
eca-miR-423-5p MIMAT0013039 Equus caballus miR-423-5p 12 80
dme-miR-2496-3p MIMAT0012207 Drosophila melanogaster miR-2496-3p 12 80
bta-miR-2385-5p MIMAT0011935 Bos taurus miR-2385-5p 12 80
cfa-miR-331 MIMAT0009895 Canis familiaris miR-331 12 80
ptr-miR-331 MIMAT0008103 Pan troglodytes miR-331 12 80
ptr-miR-324 MIMAT0008098 Pan troglodytes miR-324 12 80
hsa-miR-1913 MIMAT0007888 Homo sapiens miR-1913 12 80
cfa-miR-423a MIMAT0006742 Canis familiaris miR-423a 12 80
cfa-miR-486-3p MIMAT0032036 Canis familiaris miR-486-3p 12 80
mml-miR-423-5p MIMAT0006321 Macaca mulatta miR-423-5p 12 80
mml-miR-331-3p MIMAT0006273 Macaca mulatta miR-331-3p 12 80
mml-miR-324-3p MIMAT0006267 Macaca mulatta miR-324-3p 12 80
mml-miR-185-3p MIMAT0026831 Macaca mulatta miR-185-3p 12 80
gga-miR-1735 MIMAT0007637 Gallus gallus miR-1735 12 80
gga-miR-1607 MIMAT0007473 Gallus gallus miR-1607 12 80
gga-miR-1606 MIMAT0007472 Gallus gallus miR-1606 12 80
gga-miR-1562-3p MIMAT0007421 Gallus gallus miR-1562-3p 12 80
rno-miR-423-5p MIMAT0017305 Rattus norvegicus miR-423-5p 12 80
mdv2-miR-M19-3p MIMAT0004460 Mareks disease miR-M19-3p 12 80
bta-miR-331-3p MIMAT0004339 Bos taurus miR-331-3p 12 80
bta-miR-423-5p MIMAT0012537 Bos taurus miR-423-5p 12 80
mmu-miR-423-5p MIMAT0004825 Mus musculus miR-423-5p 12 80
mmu-miR-665-5p MIMAT0017238 Mus musculus miR-665-5p 12 80
sv40-miR-S1-5p MIMAT0003344 Simian virus miR-S1-5p 12 80
hsa-miR-423-5p MIMAT0004748 Homo sapiens miR-423-5p 12 80
hsa-miR-324-3p MIMAT0000762 Homo sapiens miR-324-3p 12 80
hsa-miR-331-3p MIMAT0000760 Homo sapiens miR-331-3p 12 80
mmu-miR-331-3p MIMAT0000571 Mus musculus miR-331-3p 12 80
rno-miR-331-3p MIMAT0000570 Rattus norvegicus miR-331-3p 12 80
mmu-miR-328-5p MIMAT0017030 Mus musculus miR-328-5p 12 80
rno-miR-328a-5p MIMAT0017029 Rattus norvegicus miR-328a-5p 12 80
hsa-miR-185-3p MIMAT0004611 Homo sapiens miR-185-3p 12 80
mmu-miR-185-3p MIMAT0016996 Mus musculus miR-185-3p 12 80
>ssa-miR-130b-2-5p MIMAT0032326 Salmo salar miR-130b-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcccct 7
|||||||
Sbjct: 1 tgcccct 7
>mmu-miR-6953-5p MIMAT0027806 Mus musculus miR-6953-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcccct 7
|||||||
Sbjct: 8 tgcccct 2
>hsa-miR-6743-5p MIMAT0027387 Homo sapiens miR-6743-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcccct 7
|||||||
Sbjct: 8 tgcccct 2
>hsa-miR-4688 MIMAT0019777 Homo sapiens miR-4688
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcccct 7
|||||||
Sbjct: 8 tgcccct 2
>pma-miR-4620 MIMAT0019654 Petromyzon marinus miR-4620
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcccct 7
|||||||
Sbjct: 8 tgcccct 2
>pma-miR-4601 MIMAT0019635 Petromyzon marinus miR-4601
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcccct 7
|||||||
Sbjct: 1 tgcccct 7
>xtr-miR-202-3p MIMAT0003621 Xenopus tropicalis miR-202-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcccct 7
|||||||
Sbjct: 7 tgcccct 1
>ata-miR9772b-3p MIMAT0037155 Aegilops tauschii miR9772b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>ata-miR9772a-3p MIMAT0037107 Aegilops tauschii miR9772a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>chi-miR-423-5p MIMAT0036220 Capra hircus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>chi-miR-324-3p MIMAT0036136 Capra hircus miR-324-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>efu-miR-331 MIMAT0035148 Eptesicus fuscus miR-331
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>efu-miR-423 MIMAT0035024 Eptesicus fuscus miR-423
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>efu-miR-9318b MIMAT0035023 Eptesicus fuscus miR-9318b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 6 tgcccc 1
>eca-miR-9163 MIMAT0034740 Equus caballus miR-9163
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 1 tgcccc 6
>eca-miR-8952 MIMAT0034481 Equus caballus miR-8952
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 1 tgcccc 6
>cfa-miR-8794 MIMAT0034284 Canis familiaris miR-8794
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 1 tgcccc 6
>gra-miR8701 MIMAT0034082 Gossypium raimondii miR8701
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>gra-miR8637 MIMAT0033987 Gossypium raimondii miR8637
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 3 gcccct 8
>pxy-miR-8498 MIMAT0033708 Plutella xylostella miR-8498
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>pxy-miR-8495-3p MIMAT0033705 Plutella xylostella miR-8495-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>str-miR-7880u-5p MIMAT0033406 Strongyloides ratti miR-7880u-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 1 tgcccc 6
>ppc-miR-8255-5p MIMAT0032978 Pristionchus pacificus miR-8255-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>ssa-miR-365-2-5p MIMAT0032624 Salmo salar miR-365-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>ssa-miR-130d-3-5p MIMAT0032330 Salmo salar miR-130d-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>ssa-miR-130b-5p MIMAT0032324 Salmo salar miR-130b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>mmu-miR-7653-5p MIMAT0029812 Mus musculus miR-7653-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>aja-miR-331 MIMAT0031150 Artibeus jamaicensis miR-331
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>mdo-miR-7283-5p MIMAT0028540 Monodelphis domestica miR-7283-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>mdo-miR-7280-3p MIMAT0028535 Monodelphis domestica miR-7280-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>mml-miR-7184-5p MIMAT0028320 Macaca mulatta miR-7184-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>mmu-miR-6982-3p MIMAT0027867 Mus musculus miR-6982-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 3 gcccct 8
>mmu-miR-6921-5p MIMAT0027742 Mus musculus miR-6921-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>mmu-miR-6897-5p MIMAT0027694 Mus musculus miR-6897-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>hsa-miR-6789-5p MIMAT0027478 Homo sapiens miR-6789-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>hsa-miR-6775-5p MIMAT0027450 Homo sapiens miR-6775-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>hsa-miR-6769a-3p MIMAT0027439 Homo sapiens miR-6769a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 3 gcccct 8
>rno-miR-3072 MIMAT0025071 Rattus norvegicus miR-3072
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 1 tgcccc 6
>ggo-miR-331 MIMAT0024128 Gorilla gorilla miR-331
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>ggo-miR-423 MIMAT0024085 Gorilla gorilla miR-423
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>cgr-miR-423-5p MIMAT0023956 Cricetulus griseus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>cgr-miR-331-3p MIMAT0023917 Cricetulus griseus miR-331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>cgr-miR-3072-3p MIMAT0023893 Cricetulus griseus miR-3072-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 1 tgcccc 6
>cgr-miR-185-3p MIMAT0023812 Cricetulus griseus miR-185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>hco-miR-2159-3p MIMAT0023509 Haemonchus contortus miR-2159-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>hsa-miR-5699-5p MIMAT0027103 Homo sapiens miR-5699-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 1 tgcccc 6
>osa-miR5486 MIMAT0022119 Oryza sativa miR5486
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>mtr-miR5273 MIMAT0021308 Medicago truncatula miR5273
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 7 gcccct 2
>hsa-miR-5090 MIMAT0021082 Homo sapiens miR-5090
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>hsa-miR-4758-3p MIMAT0019904 Homo sapiens miR-4758-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 1 tgcccc 6
>pab-miR3697 MIMAT0018129 Picea abies miR3697
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 3 gcccct 8
>cin-miR-4116-5p MIMAT0016707 Ciona intestinalis miR-4116-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 6 tgcccc 1
>cin-miR-4008c-3p MIMAT0016500 Ciona intestinalis miR-4008c-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>rno-miR-3573-5p MIMAT0017856 Rattus norvegicus miR-3573-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>rno-miR-3562 MIMAT0017832 Rattus norvegicus miR-3562
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>gga-miR-3528 MIMAT0016377 Gallus gallus miR-3528
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>ppy-miR-1913 MIMAT0016241 Pongo pygmaeus miR-1913
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>ppy-miR-423-5p MIMAT0015882 Pongo pygmaeus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>ppy-miR-331-3p MIMAT0015836 Pongo pygmaeus miR-331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>ppy-miR-324-3p MIMAT0015828 Pongo pygmaeus miR-324-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>hsa-miR-3189-5p MIMAT0019217 Homo sapiens miR-3189-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 1 tgcccc 6
>hsa-miR-3184-5p MIMAT0015064 Homo sapiens miR-3184-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>mmu-miR-3072-3p MIMAT0014853 Mus musculus miR-3072-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 1 tgcccc 6
>ssc-miR-331-3p MIMAT0013930 Sus scrofa miR-331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>ssc-miR-423-5p MIMAT0013880 Sus scrofa miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>eca-miR-331 MIMAT0013188 Equus caballus miR-331
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>eca-miR-423-5p MIMAT0013039 Equus caballus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>dme-miR-2496-3p MIMAT0012207 Drosophila melanogaster
miR-2496-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>bta-miR-2385-5p MIMAT0011935 Bos taurus miR-2385-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>cfa-miR-331 MIMAT0009895 Canis familiaris miR-331
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>ptr-miR-331 MIMAT0008103 Pan troglodytes miR-331
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>ptr-miR-324 MIMAT0008098 Pan troglodytes miR-324
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>hsa-miR-1913 MIMAT0007888 Homo sapiens miR-1913
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>cfa-miR-423a MIMAT0006742 Canis familiaris miR-423a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>cfa-miR-486-3p MIMAT0032036 Canis familiaris miR-486-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>mml-miR-423-5p MIMAT0006321 Macaca mulatta miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>mml-miR-331-3p MIMAT0006273 Macaca mulatta miR-331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>mml-miR-324-3p MIMAT0006267 Macaca mulatta miR-324-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>mml-miR-185-3p MIMAT0026831 Macaca mulatta miR-185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>gga-miR-1735 MIMAT0007637 Gallus gallus miR-1735
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>gga-miR-1607 MIMAT0007473 Gallus gallus miR-1607
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>gga-miR-1606 MIMAT0007472 Gallus gallus miR-1606
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>gga-miR-1562-3p MIMAT0007421 Gallus gallus miR-1562-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>rno-miR-423-5p MIMAT0017305 Rattus norvegicus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>mdv2-miR-M19-3p MIMAT0004460 Mareks disease miR-M19-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>bta-miR-331-3p MIMAT0004339 Bos taurus miR-331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>bta-miR-423-5p MIMAT0012537 Bos taurus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>mmu-miR-423-5p MIMAT0004825 Mus musculus miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>mmu-miR-665-5p MIMAT0017238 Mus musculus miR-665-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>sv40-miR-S1-5p MIMAT0003344 Simian virus miR-S1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>hsa-miR-423-5p MIMAT0004748 Homo sapiens miR-423-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 8 gcccct 3
>hsa-miR-324-3p MIMAT0000762 Homo sapiens miR-324-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgcccc 6
||||||
Sbjct: 3 tgcccc 8
>hsa-miR-331-3p MIMAT0000760 Homo sapiens miR-331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>mmu-miR-331-3p MIMAT0000571 Mus musculus miR-331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>rno-miR-331-3p MIMAT0000570 Rattus norvegicus miR-331-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcccct 7
||||||
Sbjct: 1 gcccct 6
>mmu-miR-328-5p MIMAT0017030 Mus musculus miR-328-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>rno-miR-328a-5p MIMAT0017029 Rattus norvegicus miR-328a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgcccc 6
||||||
Sbjct: 8 tgcccc 3
>hsa-miR-185-3p MIMAT0004611 Homo sapiens miR-185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
>mmu-miR-185-3p MIMAT0016996 Mus musculus miR-185-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcccct 7
||||||
Sbjct: 6 gcccct 1
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 127
Number of extensions: 120
Number of successful extensions: 99
Number of sequences better than 100.0: 99
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 99
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
