BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tumv-miR-s35
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
rno-miR-3566 MIMAT0017841 Rattus norvegicus miR-3566 14 20
mmu-miR-1948-3p MIMAT0009415 Mus musculus miR-1948-3p 14 20
oha-miR-24-2-5p MIMAT0036860 Ophiophagus hannah miR-24-2-5p 12 80
gma-miR9726 MIMAT0036342 Glycine max miR9726 12 80
bra-miR9566-3p MIMAT0035692 Brassica rapa miR9566-3p 12 80
ssa-miR-24b-5p MIMAT0032558 Salmo salar miR-24b-5p 12 80
ssa-miR-24a-3-5p MIMAT0032557 Salmo salar miR-24a-3-5p 12 80
ssa-miR-24a-5p MIMAT0032556 Salmo salar miR-24a-5p 12 80
prd-miR-7910b-3p MIMAT0030725 Panagrellus redivivus miR-7910b-3p 12 80
bdi-miR7709-3p MIMAT0030136 Brachypodium distachyon miR7709-3p 12 80
osa-miR7695-5p MIMAT0029961 Oryza sativa miR7695-5p 12 80
gga-miR-7473-3p MIMAT0029101 Gallus gallus miR-7473-3p 12 80
mdo-miR-449b-5p MIMAT0028582 Monodelphis domestica miR-449b-5p 12 80
hsa-miR-6806-5p MIMAT0027512 Homo sapiens miR-6806-5p 12 80
ptc-miR6448 MIMAT0025251 Populus trichocarpa miR6448 12 80
ola-miR-24b-5p MIMAT0022644 Oryzias latipes miR-24b-5p 12 80
tur-miR-5727-5p MIMAT0023028 Tetranychus urticae miR-5727-5p 12 80
hsa-miR-5704 MIMAT0022498 Homo sapiens miR-5704 12 80
ath-miR1888b MIMAT0022436 Arabidopsis thaliana miR1888b 12 80
hsa-miR-5582-5p MIMAT0022279 Homo sapiens miR-5582-5p 12 80
osa-miR5509 MIMAT0022142 Oryza sativa miR5509 12 80
aca-miR-5464-3p MIMAT0022097 Anolis carolinensis miR-5464-3p 12 80
aca-miR-5435c-5p MIMAT0022093 Anolis carolinensis miR-5435c-5p 12 80
aca-miR-24-2-5p MIMAT0021901 Anolis carolinensis miR-24-2-5p 12 80
aca-miR-24-1-5p MIMAT0021899 Anolis carolinensis miR-24-1-5p 12 80
bdi-miR5065 MIMAT0020572 Brachypodium distachyon miR5065 12 80
hsa-miR-4774-3p MIMAT0019930 Homo sapiens miR-4774-3p 12 80
ppy-miR-1295 MIMAT0016216 Pongo pygmaeus miR-1295 12 80
ppy-miR-1285a MIMAT0016207 Pongo pygmaeus miR-1285a 12 80
hsa-miR-3135a MIMAT0015001 Homo sapiens miR-3135a 12 80
dps-miR-2507b-5p MIMAT0012370 Drosophila pseudoobscura miR-2507b-5p 12 80
dps-miR-2512 MIMAT0012297 Drosophila pseudoobscura miR-2512 12 80
sme-miR-2153 MIMAT0011234 Schmidtea mediterranea miR-2153 12 80
ptr-miR-1295 MIMAT0008014 Pan troglodytes miR-1295 12 80
oan-miR-24-1-5p MIMAT0006954 Ornithorhynchus anatinus miR-24-1-5p 12 80
hsa-miR-1295a MIMAT0005885 Homo sapiens miR-1295a 12 80
cre-miR1162-5p MIMAT0005415 Chlamydomonas reinhardtii miR1162-5p 12 80
ppt-miR898a-3p MIMAT0004383 Physcomitrella patens miR898a-3p 12 80
mmu-miR-3106-3p MIMAT0014818 Mus musculus miR-3106-3p 12 80
hsa-miR-449c-5p MIMAT0010251 Homo sapiens miR-449c-5p 12 80
dre-miR-34b MIMAT0003346 Danio rerio miR-34b 12 80
hsa-miR-34b-5p MIMAT0000685 Homo sapiens miR-34b-5p 12 80
cel-miR-272 MIMAT0000328 Caenorhabditis elegans miR-272 12 80
hsa-miR-24-2-5p MIMAT0004497 Homo sapiens miR-24-2-5p 12 80
hsa-miR-24-1-5p MIMAT0000079 Homo sapiens miR-24-1-5p 12 80
>rno-miR-3566 MIMAT0017841 Rattus norvegicus miR-3566
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcctaa 7
|||||||
Sbjct: 2 tgcctaa 8
>mmu-miR-1948-3p MIMAT0009415 Mus musculus miR-1948-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctaa 7
|||||||
Sbjct: 8 tgcctaa 2
>oha-miR-24-2-5p MIMAT0036860 Ophiophagus hannah miR-24-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>gma-miR9726 MIMAT0036342 Glycine max miR9726
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 8 tgccta 3
>bra-miR9566-3p MIMAT0035692 Brassica rapa miR9566-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcctaa 7
||||||
Sbjct: 3 gcctaa 8
>ssa-miR-24b-5p MIMAT0032558 Salmo salar miR-24b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>ssa-miR-24a-3-5p MIMAT0032557 Salmo salar miR-24a-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>ssa-miR-24a-5p MIMAT0032556 Salmo salar miR-24a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>prd-miR-7910b-3p MIMAT0030725 Panagrellus redivivus
miR-7910b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcctaa 7
||||||
Sbjct: 6 gcctaa 1
>bdi-miR7709-3p MIMAT0030136 Brachypodium distachyon miR7709-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 3 tgccta 8
>osa-miR7695-5p MIMAT0029961 Oryza sativa miR7695-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>gga-miR-7473-3p MIMAT0029101 Gallus gallus miR-7473-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcctaa 7
||||||
Sbjct: 8 gcctaa 3
>mdo-miR-449b-5p MIMAT0028582 Monodelphis domestica miR-449b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>hsa-miR-6806-5p MIMAT0027512 Homo sapiens miR-6806-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 8 tgccta 3
>ptc-miR6448 MIMAT0025251 Populus trichocarpa miR6448
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>ola-miR-24b-5p MIMAT0022644 Oryzias latipes miR-24b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>tur-miR-5727-5p MIMAT0023028 Tetranychus urticae miR-5727-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>hsa-miR-5704 MIMAT0022498 Homo sapiens miR-5704
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcctaa 7
||||||
Sbjct: 6 gcctaa 1
>ath-miR1888b MIMAT0022436 Arabidopsis thaliana miR1888b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcctaa 7
||||||
Sbjct: 6 gcctaa 1
>hsa-miR-5582-5p MIMAT0022279 Homo sapiens miR-5582-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>osa-miR5509 MIMAT0022142 Oryza sativa miR5509
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>aca-miR-5464-3p MIMAT0022097 Anolis carolinensis miR-5464-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 3 tgccta 8
>aca-miR-5435c-5p MIMAT0022093 Anolis carolinensis miR-5435c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>aca-miR-24-2-5p MIMAT0021901 Anolis carolinensis miR-24-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>aca-miR-24-1-5p MIMAT0021899 Anolis carolinensis miR-24-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>bdi-miR5065 MIMAT0020572 Brachypodium distachyon miR5065
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>hsa-miR-4774-3p MIMAT0019930 Homo sapiens miR-4774-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 3 tgccta 8
>ppy-miR-1295 MIMAT0016216 Pongo pygmaeus miR-1295
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcctaa 7
||||||
Sbjct: 6 gcctaa 1
>ppy-miR-1285a MIMAT0016207 Pongo pygmaeus miR-1285a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 8 tgccta 3
>hsa-miR-3135a MIMAT0015001 Homo sapiens miR-3135a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>dps-miR-2507b-5p MIMAT0012370 Drosophila pseudoobscura
miR-2507b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>dps-miR-2512 MIMAT0012297 Drosophila pseudoobscura miR-2512
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>sme-miR-2153 MIMAT0011234 Schmidtea mediterranea miR-2153
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>ptr-miR-1295 MIMAT0008014 Pan troglodytes miR-1295
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcctaa 7
||||||
Sbjct: 6 gcctaa 1
>oan-miR-24-1-5p MIMAT0006954 Ornithorhynchus anatinus
miR-24-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>hsa-miR-1295a MIMAT0005885 Homo sapiens miR-1295a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gcctaa 7
||||||
Sbjct: 6 gcctaa 1
>cre-miR1162-5p MIMAT0005415 Chlamydomonas reinhardtii
miR1162-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gcctaa 7
||||||
Sbjct: 3 gcctaa 8
>ppt-miR898a-3p MIMAT0004383 Physcomitrella patens miR898a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 8 tgccta 3
>mmu-miR-3106-3p MIMAT0014818 Mus musculus miR-3106-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 3 tgccta 8
>hsa-miR-449c-5p MIMAT0010251 Homo sapiens miR-449c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>dre-miR-34b MIMAT0003346 Danio rerio miR-34b
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>hsa-miR-34b-5p MIMAT0000685 Homo sapiens miR-34b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 6 tgccta 1
>cel-miR-272 MIMAT0000328 Caenorhabditis elegans miR-272
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgccta 6
||||||
Sbjct: 8 tgccta 3
>hsa-miR-24-2-5p MIMAT0004497 Homo sapiens miR-24-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
>hsa-miR-24-1-5p MIMAT0000079 Homo sapiens miR-24-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgccta 6
||||||
Sbjct: 1 tgccta 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 75
Number of extensions: 73
Number of successful extensions: 45
Number of sequences better than 100.0: 45
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 45
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
