BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dev-miR-d8-5p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dev-miR-D8-5p MIMAT0028178 Duck enteritis miR-D8-5p 16 6.9
hsa-miR-6778-3p MIMAT0027457 Homo sapiens miR-6778-3p 16 6.9
oha-miR-31-5p MIMAT0036897 Ophiophagus hannah miR-31-5p 14 27
bra-miR162-5p MIMAT0035830 Brassica rapa miR162-5p 14 27
stu-miR162b-5p MIMAT0031281 Solanum tuberosum miR162b-5p 14 27
stu-miR162a-5p MIMAT0031279 Solanum tuberosum miR162a-5p 14 27
mmu-miR-7033-3p MIMAT0027971 Mus musculus miR-7033-3p 14 27
mmu-miR-6979-5p MIMAT0027860 Mus musculus miR-6979-5p 14 27
hsa-miR-6836-3p MIMAT0027575 Homo sapiens miR-6836-3p 14 27
hsa-miR-6829-3p MIMAT0027559 Homo sapiens miR-6829-3p 14 27
hsa-miR-6791-3p MIMAT0027483 Homo sapiens miR-6791-3p 14 27
gga-miR-6573-3p MIMAT0025654 Gallus gallus miR-6573-3p 14 27
ggo-miR-3612 MIMAT0024258 Gorilla gorilla miR-3612 14 27
hsa-miR-3612 MIMAT0017989 Homo sapiens miR-3612 14 27
ppy-miR-650 MIMAT0016083 Pongo pygmaeus miR-650 14 27
aly-miR162b-5p MIMAT0017447 Arabidopsis lyrata miR162b-5p 14 27
aly-miR162a-5p MIMAT0017445 Arabidopsis lyrata miR162a-5p 14 27
bmo-miR-3382-3p MIMAT0015576 Bombyx mori miR-3382-3p 14 27
bmo-miR-3273 MIMAT0015458 Bombyx mori miR-3273 14 27
csi-miR162-5p MIMAT0017388 Citrus sinensis miR162-5p 14 27
ptr-miR-650 MIMAT0008301 Pan troglodytes miR-650 14 27
mml-miR-650c MIMAT0006490 Macaca mulatta miR-650c 14 27
mml-miR-650b MIMAT0006489 Macaca mulatta miR-650b 14 27
mml-miR-650a MIMAT0006488 Macaca mulatta miR-650a 14 27
mdo-miR-31-5p MIMAT0004094 Monodelphis domestica miR-31-5p 14 27
mmu-miR-709 MIMAT0003499 Mus musculus miR-709 14 27
hsa-miR-650 MIMAT0003320 Homo sapiens miR-650 14 27
ath-miR162b-5p MIMAT0031877 Arabidopsis thaliana miR162b-5p 14 27
ath-miR162a-5p MIMAT0031876 Arabidopsis thaliana miR162a-5p 14 27
>dev-miR-D8-5p MIMAT0028178 Duck enteritis miR-D8-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcctccc 8
||||||||
Sbjct: 1 tgcctccc 8
>hsa-miR-6778-3p MIMAT0027457 Homo sapiens miR-6778-3p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgcctccc 8
||||||||
Sbjct: 1 tgcctccc 8
>oha-miR-31-5p MIMAT0036897 Ophiophagus hannah miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 7 tgcctcc 1
>bra-miR162-5p MIMAT0035830 Brassica rapa miR162-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 7 tgcctcc 1
>stu-miR162b-5p MIMAT0031281 Solanum tuberosum miR162b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 7 tgcctcc 1
>stu-miR162a-5p MIMAT0031279 Solanum tuberosum miR162a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 7 tgcctcc 1
>mmu-miR-7033-3p MIMAT0027971 Mus musculus miR-7033-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcctcc 7
|||||||
Sbjct: 1 tgcctcc 7
>mmu-miR-6979-5p MIMAT0027860 Mus musculus miR-6979-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 2 gcctccc 8
|||||||
Sbjct: 8 gcctccc 2
>hsa-miR-6836-3p MIMAT0027575 Homo sapiens miR-6836-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcctcc 7
|||||||
Sbjct: 2 tgcctcc 8
>hsa-miR-6829-3p MIMAT0027559 Homo sapiens miR-6829-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcctcc 7
|||||||
Sbjct: 1 tgcctcc 7
>hsa-miR-6791-3p MIMAT0027483 Homo sapiens miR-6791-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcctcc 7
|||||||
Sbjct: 1 tgcctcc 7
>gga-miR-6573-3p MIMAT0025654 Gallus gallus miR-6573-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 7 tgcctcc 1
>ggo-miR-3612 MIMAT0024258 Gorilla gorilla miR-3612
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
>hsa-miR-3612 MIMAT0017989 Homo sapiens miR-3612
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
>ppy-miR-650 MIMAT0016083 Pongo pygmaeus miR-650
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
>aly-miR162b-5p MIMAT0017447 Arabidopsis lyrata miR162b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 7 tgcctcc 1
>aly-miR162a-5p MIMAT0017445 Arabidopsis lyrata miR162a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 7 tgcctcc 1
>bmo-miR-3382-3p MIMAT0015576 Bombyx mori miR-3382-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcctcc 7
|||||||
Sbjct: 1 tgcctcc 7
>bmo-miR-3273 MIMAT0015458 Bombyx mori miR-3273
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgcctcc 7
|||||||
Sbjct: 1 tgcctcc 7
>csi-miR162-5p MIMAT0017388 Citrus sinensis miR162-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
>ptr-miR-650 MIMAT0008301 Pan troglodytes miR-650
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
>mml-miR-650c MIMAT0006490 Macaca mulatta miR-650c
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
>mml-miR-650b MIMAT0006489 Macaca mulatta miR-650b
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
>mml-miR-650a MIMAT0006488 Macaca mulatta miR-650a
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
>mdo-miR-31-5p MIMAT0004094 Monodelphis domestica miR-31-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 7 tgcctcc 1
>mmu-miR-709 MIMAT0003499 Mus musculus miR-709
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 7 tgcctcc 1
>hsa-miR-650 MIMAT0003320 Homo sapiens miR-650
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
>ath-miR162b-5p MIMAT0031877 Arabidopsis thaliana miR162b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
>ath-miR162a-5p MIMAT0031876 Arabidopsis thaliana miR162a-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgcctcc 7
|||||||
Sbjct: 8 tgcctcc 2
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 192
Number of extensions: 161
Number of successful extensions: 122
Number of sequences better than 100.0: 29
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 29
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
