BLAST Search Results
BLASTN 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= hsv2-miR-h25
         (7 letters)

Database: /home/users/abid/BLAST/MIRBASE 
           35,828 sequences; 286,624 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gga-miR-3523 MIMAT0016373 Gallus gallus miR-3523                       14      20
hsv2-miR-H25 MIMAT0014708 Herpes Simplex miR-H25                       14      20
oan-miR-1421b-3p MIMAT0006966 Ornithorhynchus anatinus miR-1421b-3p    14      20
gga-miR-7455-5p MIMAT0029064 Gallus gallus miR-7455-5p                 12      80
hsa-miR-6869-3p MIMAT0027639 Homo sapiens miR-6869-3p                  12      80
hvsa-miR-HSUR5-5p MIMAT0022682 Herpesvirus saimiri miR-HSUR5-5p        12      80
hsa-miR-3939 MIMAT0018355 Homo sapiens miR-3939                        12      80
ppy-miR-937 MIMAT0016137 Pongo pygmaeus miR-937                        12      80
bta-miR-2903 MIMAT0013861 Bos taurus miR-2903                          12      80
eca-miR-675 MIMAT0013053 Equus caballus miR-675                        12      80
ptr-miR-937 MIMAT0008344 Pan troglodytes miR-937                       12      80
hsa-miR-937-3p MIMAT0004980 Homo sapiens miR-937-3p                    12      80
>gga-miR-3523 MIMAT0016373 Gallus gallus miR-3523
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgcgcgg 7
         |||||||
Sbjct: 7 tgcgcgg 1
>hsv2-miR-H25 MIMAT0014708 Herpes Simplex miR-H25
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Plus

                
Query: 1 tgcgcgg 7
         |||||||
Sbjct: 2 tgcgcgg 8
>oan-miR-1421b-3p MIMAT0006966 Ornithorhynchus anatinus
         miR-1421b-3p
          Length = 8

 Score = 14.4 bits (7), Expect =    20
 Identities = 7/7 (100%)
 Strand = Plus / Minus

                
Query: 1 tgcgcgg 7
         |||||||
Sbjct: 7 tgcgcgg 1
>gga-miR-7455-5p MIMAT0029064 Gallus gallus miR-7455-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gcgcgg 7
         ||||||
Sbjct: 3 gcgcgg 8
>hsa-miR-6869-3p MIMAT0027639 Homo sapiens miR-6869-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gcgcgg 7
         ||||||
Sbjct: 8 gcgcgg 3
>hvsa-miR-HSUR5-5p MIMAT0022682 Herpesvirus saimiri miR-HSUR5-5p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gcgcgg 7
         ||||||
Sbjct: 7 gcgcgg 2
>hsa-miR-3939 MIMAT0018355 Homo sapiens miR-3939
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 1 tgcgcg 6
         ||||||
Sbjct: 8 tgcgcg 3
>ppy-miR-937 MIMAT0016137 Pongo pygmaeus miR-937
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gcgcgg 7
         ||||||
Sbjct: 8 gcgcgg 3
>bta-miR-2903 MIMAT0013861 Bos taurus miR-2903
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gcgcgg 7
         ||||||
Sbjct: 8 gcgcgg 3
>eca-miR-675 MIMAT0013053 Equus caballus miR-675
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Plus

               
Query: 2 gcgcgg 7
         ||||||
Sbjct: 3 gcgcgg 8
>ptr-miR-937 MIMAT0008344 Pan troglodytes miR-937
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gcgcgg 7
         ||||||
Sbjct: 8 gcgcgg 3
>hsa-miR-937-3p MIMAT0004980 Homo sapiens miR-937-3p
          Length = 8

 Score = 12.4 bits (6), Expect =    80
 Identities = 6/6 (100%)
 Strand = Plus / Minus

               
Query: 2 gcgcgg 7
         ||||||
Sbjct: 8 gcgcgg 3
  Database: /home/users/abid/BLAST/MIRBASE
    Posted date:  Sep 2, 2014  3:58 PM
  Number of letters in database: 286,624
  Number of sequences in database:  35,828
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 21
Number of extensions: 18
Number of successful extensions: 12
Number of sequences better than 100.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space:   429936
Effective search space used:   429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)