BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b20-3p
(7 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p 14 20
tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958 14 20
hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p 14 20
osa-miR2092-3p MIMAT0010049 Oryza sativa miR2092-3p 14 20
ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634 14 20
gga-miR-1654 MIMAT0007533 Gallus gallus miR-1654 14 20
cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1 14 20
hsa-miR-634 MIMAT0003304 Homo sapiens miR-634 14 20
cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p 14 20
oha-miR-449a-3p MIMAT0036926 Ophiophagus hannah miR-449a-3p 12 80
oha-miR-133a-3-5p MIMAT0036703 Ophiophagus hannah miR-133a-3-5p 12 80
oha-miR-133b-5p MIMAT0036701 Ophiophagus hannah miR-133b-5p 12 80
bra-miR6032-3p MIMAT0035863 Brassica rapa miR6032-3p 12 80
efu-miR-9238 MIMAT0034854 Eptesicus fuscus miR-9238 12 80
eca-miR-8979 MIMAT0034516 Equus caballus miR-8979 12 80
eca-miR-8932 MIMAT0034460 Equus caballus miR-8932 12 80
eca-miR-8929 MIMAT0034457 Equus caballus miR-8929 12 80
pra-miR8788b-3p MIMAT0034277 Phytophthora ramorum miR8788b-3p 12 80
pra-miR8788a-3p MIMAT0034275 Phytophthora ramorum miR8788a-3p 12 80
pin-miR8788-3p MIMAT0034269 Phytophthora infestans miR8788-3p 12 80
str-miR-7880q-5p MIMAT0033378 Strongyloides ratti miR-7880q-5p 12 80
ppc-miR-133-5p MIMAT0032914 Pristionchus pacificus miR-133-5p 12 80
ssa-miR-8160-3p MIMAT0032747 Salmo salar miR-8160-3p 12 80
ssa-miR-133b-5p MIMAT0032339 Salmo salar miR-133b-5p 12 80
ipu-miR-16c MIMAT0029538 Ictalurus punctatus miR-16c 12 80
mdo-miR-7349-5p MIMAT0028710 Monodelphis domestica miR-7349-5p 12 80
mdo-miR-29b-2-5p MIMAT0031047 Monodelphis domestica miR-29b-2-5p 12 80
ssc-miR-7138-5p MIMAT0028151 Sus scrofa miR-7138-5p 12 80
mmu-miR-7087-3p MIMAT0028081 Mus musculus miR-7087-3p 12 80
mmu-miR-7024-3p MIMAT0027953 Mus musculus miR-7024-3p 12 80
hsa-miR-6849-3p MIMAT0027599 Homo sapiens miR-6849-3p 12 80
gga-miR-6650-5p MIMAT0025750 Gallus gallus miR-6650-5p 12 80
gga-miR-6649-3p MIMAT0025749 Gallus gallus miR-6649-3p 12 80
gga-miR-6611-5p MIMAT0025706 Gallus gallus miR-6611-5p 12 80
gga-miR-6593-5p MIMAT0025686 Gallus gallus miR-6593-5p 12 80
gga-miR-6587-3p MIMAT0025679 Gallus gallus miR-6587-3p 12 80
pol-miR-133-5p MIMAT0025432 Paralichthys olivaceus miR-133-5p 12 80
mml-miR-6131 MIMAT0024624 Macaca mulatta miR-6131 12 80
ggo-miR-1287 MIMAT0024233 Gorilla gorilla miR-1287 12 80
cgr-miR-29b-5p MIMAT0023885 Cricetulus griseus miR-29b-5p 12 80
hco-miR-5973 MIMAT0023480 Haemonchus contortus miR-5973 12 80
gma-miR5782 MIMAT0023187 Glycine max miR5782 12 80
sha-miR-363 MIMAT0022831 Sarcophilus harrisii miR-363 12 80
hsa-miR-5580-5p MIMAT0022273 Homo sapiens miR-5580-5p 12 80
mtr-miR2592bg MIMAT0021204 Medicago truncatula miR2592bg 12 80
mtr-miR2592bf MIMAT0021203 Medicago truncatula miR2592bf 12 80
mtr-miR2592be MIMAT0021202 Medicago truncatula miR2592be 12 80
mtr-miR2592bd MIMAT0021201 Medicago truncatula miR2592bd 12 80
mtr-miR2592bc MIMAT0021200 Medicago truncatula miR2592bc 12 80
mtr-miR2592bb MIMAT0021199 Medicago truncatula miR2592bb 12 80
mtr-miR2592ba MIMAT0021198 Medicago truncatula miR2592ba 12 80
mtr-miR2592az MIMAT0021197 Medicago truncatula miR2592az 12 80
mtr-miR2592ay MIMAT0021196 Medicago truncatula miR2592ay 12 80
mtr-miR2592ax MIMAT0021195 Medicago truncatula miR2592ax 12 80
mtr-miR2592aw MIMAT0021194 Medicago truncatula miR2592aw 12 80
mtr-miR2592av MIMAT0021193 Medicago truncatula miR2592av 12 80
mtr-miR2592au MIMAT0021192 Medicago truncatula miR2592au 12 80
mtr-miR2592at MIMAT0021191 Medicago truncatula miR2592at 12 80
mtr-miR2592as MIMAT0021190 Medicago truncatula miR2592as 12 80
mtr-miR2592ar MIMAT0021189 Medicago truncatula miR2592ar 12 80
mtr-miR2592aq MIMAT0021188 Medicago truncatula miR2592aq 12 80
mtr-miR2592ap MIMAT0021187 Medicago truncatula miR2592ap 12 80
rgl-miR5140 MIMAT0020651 Rehmannia glutinosa miR5140 12 80
gma-miR862a MIMAT0021004 Glycine max miR862a 12 80
hsa-miR-4738-5p MIMAT0019866 Homo sapiens miR-4738-5p 12 80
hsa-miR-4731-5p MIMAT0019853 Homo sapiens miR-4731-5p 12 80
pma-miR-4563 MIMAT0019595 Petromyzon marinus miR-4563 12 80
pma-miR-4558 MIMAT0019590 Petromyzon marinus miR-4558 12 80
tca-miR-316-3p MIMAT0018717 Tribolium castaneum miR-316-3p 12 80
hsa-miR-3692-5p MIMAT0018121 Homo sapiens miR-3692-5p 12 80
hsa-miR-3663-5p MIMAT0018084 Homo sapiens miR-3663-5p 12 80
vvi-miR3625-5p MIMAT0018013 Vitis vinifera miR3625-5p 12 80
hsa-miR-4299 MIMAT0016851 Homo sapiens miR-4299 12 80
rno-miR-133c MIMAT0017872 Rattus norvegicus miR-133c 12 80
rno-miR-3575 MIMAT0017861 Rattus norvegicus miR-3575 12 80
ppy-miR-1287 MIMAT0016210 Pongo pygmaeus miR-1287 12 80
ppy-miR-1226 MIMAT0016162 Pongo pygmaeus miR-1226 12 80
hvt-miR-H5-5p MIMAT0012716 Herpesvirus of miR-H5-5p 12 80
bmo-miR-2723 MIMAT0012599 Bombyx mori miR-2723 12 80
cte-miR-2688-5p MIMAT0013540 Capitella teleta miR-2688-5p 12 80
bta-miR-2400 MIMAT0011956 Bos taurus miR-2400 12 80
mcv-miR-M1-3p MIMAT0010151 Merkel cell miR-M1-3p 12 80
hsa-miR-548q MIMAT0011163 Homo sapiens miR-548q 12 80
bta-miR-1287 MIMAT0009971 Bos taurus miR-1287 12 80
lgi-miR-133-5p MIMAT0009579 Lottia gigantea miR-133-5p 12 80
tca-miR-133-5p MIMAT0019116 Tribolium castaneum miR-133-5p 12 80
cfa-miR-1838 MIMAT0006644 Canis familiaris miR-1838 12 80
mml-miR-29b-2-5p MIMAT0031079 Macaca mulatta miR-29b-2-5p 12 80
mml-miR-29b-1-5p MIMAT0026803 Macaca mulatta miR-29b-1-5p 12 80
gga-miR-1701 MIMAT0007593 Gallus gallus miR-1701 12 80
gga-miR-1656 MIMAT0007535 Gallus gallus miR-1656 12 80
cin-miR-92a-5p MIMAT0015253 Ciona intestinalis miR-92a-5p 12 80
oan-miR-1419b-5p MIMAT0007240 Ornithorhynchus anatinus miR-1419b-5p 12 80
oan-miR-133b-5p MIMAT0006996 Ornithorhynchus anatinus miR-133b-5p 12 80
hsa-miR-1287-5p MIMAT0005878 Homo sapiens miR-1287-5p 12 80
mml-miR-1226 MIMAT0005579 Macaca mulatta miR-1226 12 80
ptr-miR-1226 MIMAT0005578 Pan troglodytes miR-1226 12 80
hsa-miR-1226-3p MIMAT0005577 Homo sapiens miR-1226-3p 12 80
smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107 12 80
ath-miR832-5p MIMAT0004250 Arabidopsis thaliana miR832-5p 12 80
mdo-miR-29b-1-5p MIMAT0026703 Monodelphis domestica miR-29b-1-5p 12 80
rno-miR-133b-5p MIMAT0017205 Rattus norvegicus miR-133b-5p 12 80
kshv-miR-K12-6-5p MIMAT0002188 Kaposi sarcoma-associated miR-K12... 12 80
dre-miR-133c-5p MIMAT0031971 Danio rerio miR-133c-5p 12 80
dre-miR-133b-5p MIMAT0003405 Danio rerio miR-133b-5p 12 80
gga-miR-29b-2-5p MIMAT0031072 Gallus gallus miR-29b-2-5p 12 80
gga-miR-133c-5p MIMAT0026537 Gallus gallus miR-133c-5p 12 80
gga-miR-29b-1-5p MIMAT0026488 Gallus gallus miR-29b-1-5p 12 80
mmu-miR-133b-5p MIMAT0017083 Mus musculus miR-133b-5p 12 80
dme-miR-133-5p MIMAT0020806 Drosophila melanogaster miR-133-5p 12 80
mmu-miR-133a-5p MIMAT0003473 Mus musculus miR-133a-5p 12 80
mmu-miR-29b-1-5p MIMAT0004523 Mus musculus miR-29b-1-5p 12 80
hsa-miR-29b-1-5p MIMAT0004514 Homo sapiens miR-29b-1-5p 12 80
>tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgctggt 7
|||||||
Sbjct: 7 tgctggt 1
>tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctggt 7
|||||||
Sbjct: 1 tgctggt 7
>hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctggt 7
|||||||
Sbjct: 2 tgctggt 8
>osa-miR2092-3p MIMAT0010049 Oryza sativa miR2092-3p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgctggt 7
|||||||
Sbjct: 7 tgctggt 1
>ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgctggt 7
|||||||
Sbjct: 8 tgctggt 2
>gga-miR-1654 MIMAT0007533 Gallus gallus miR-1654
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctggt 7
|||||||
Sbjct: 2 tgctggt 8
>cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctggt 7
|||||||
Sbjct: 1 tgctggt 7
>hsa-miR-634 MIMAT0003304 Homo sapiens miR-634
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgctggt 7
|||||||
Sbjct: 8 tgctggt 2
>cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p
Length = 8
Score = 14.4 bits (7), Expect = 20
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctggt 7
|||||||
Sbjct: 1 tgctggt 7
>oha-miR-449a-3p MIMAT0036926 Ophiophagus hannah miR-449a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggt 7
||||||
Sbjct: 6 gctggt 1
>oha-miR-133a-3-5p MIMAT0036703 Ophiophagus hannah miR-133a-3-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>oha-miR-133b-5p MIMAT0036701 Ophiophagus hannah miR-133b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>bra-miR6032-3p MIMAT0035863 Brassica rapa miR6032-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 3 tgctgg 8
>efu-miR-9238 MIMAT0034854 Eptesicus fuscus miR-9238
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 8 tgctgg 3
>eca-miR-8979 MIMAT0034516 Equus caballus miR-8979
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>eca-miR-8932 MIMAT0034460 Equus caballus miR-8932
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 3 tgctgg 8
>eca-miR-8929 MIMAT0034457 Equus caballus miR-8929
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>pra-miR8788b-3p MIMAT0034277 Phytophthora ramorum miR8788b-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>pra-miR8788a-3p MIMAT0034275 Phytophthora ramorum miR8788a-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>pin-miR8788-3p MIMAT0034269 Phytophthora infestans miR8788-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>str-miR-7880q-5p MIMAT0033378 Strongyloides ratti miR-7880q-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 2 gctggt 7
>ppc-miR-133-5p MIMAT0032914 Pristionchus pacificus miR-133-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>ssa-miR-8160-3p MIMAT0032747 Salmo salar miR-8160-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 6 tgctgg 1
>ssa-miR-133b-5p MIMAT0032339 Salmo salar miR-133b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>ipu-miR-16c MIMAT0029538 Ictalurus punctatus miR-16c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 6 tgctgg 1
>mdo-miR-7349-5p MIMAT0028710 Monodelphis domestica miR-7349-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>mdo-miR-29b-2-5p MIMAT0031047 Monodelphis domestica
miR-29b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>ssc-miR-7138-5p MIMAT0028151 Sus scrofa miR-7138-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 8 tgctgg 3
>mmu-miR-7087-3p MIMAT0028081 Mus musculus miR-7087-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>mmu-miR-7024-3p MIMAT0027953 Mus musculus miR-7024-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 6 tgctgg 1
>hsa-miR-6849-3p MIMAT0027599 Homo sapiens miR-6849-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggt 7
||||||
Sbjct: 6 gctggt 1
>gga-miR-6650-5p MIMAT0025750 Gallus gallus miR-6650-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 8 tgctgg 3
>gga-miR-6649-3p MIMAT0025749 Gallus gallus miR-6649-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>gga-miR-6611-5p MIMAT0025706 Gallus gallus miR-6611-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>gga-miR-6593-5p MIMAT0025686 Gallus gallus miR-6593-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>gga-miR-6587-3p MIMAT0025679 Gallus gallus miR-6587-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>pol-miR-133-5p MIMAT0025432 Paralichthys olivaceus miR-133-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>mml-miR-6131 MIMAT0024624 Macaca mulatta miR-6131
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 2 gctggt 7
>ggo-miR-1287 MIMAT0024233 Gorilla gorilla miR-1287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>cgr-miR-29b-5p MIMAT0023885 Cricetulus griseus miR-29b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>hco-miR-5973 MIMAT0023480 Haemonchus contortus miR-5973
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 3 tgctgg 8
>gma-miR5782 MIMAT0023187 Glycine max miR5782
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>sha-miR-363 MIMAT0022831 Sarcophilus harrisii miR-363
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>hsa-miR-5580-5p MIMAT0022273 Homo sapiens miR-5580-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>mtr-miR2592bg MIMAT0021204 Medicago truncatula miR2592bg
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592bf MIMAT0021203 Medicago truncatula miR2592bf
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592be MIMAT0021202 Medicago truncatula miR2592be
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592bd MIMAT0021201 Medicago truncatula miR2592bd
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592bc MIMAT0021200 Medicago truncatula miR2592bc
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592bb MIMAT0021199 Medicago truncatula miR2592bb
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592ba MIMAT0021198 Medicago truncatula miR2592ba
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592az MIMAT0021197 Medicago truncatula miR2592az
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592ay MIMAT0021196 Medicago truncatula miR2592ay
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592ax MIMAT0021195 Medicago truncatula miR2592ax
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592aw MIMAT0021194 Medicago truncatula miR2592aw
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592av MIMAT0021193 Medicago truncatula miR2592av
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592au MIMAT0021192 Medicago truncatula miR2592au
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592at MIMAT0021191 Medicago truncatula miR2592at
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592as MIMAT0021190 Medicago truncatula miR2592as
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592ar MIMAT0021189 Medicago truncatula miR2592ar
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592aq MIMAT0021188 Medicago truncatula miR2592aq
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>mtr-miR2592ap MIMAT0021187 Medicago truncatula miR2592ap
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>rgl-miR5140 MIMAT0020651 Rehmannia glutinosa miR5140
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>gma-miR862a MIMAT0021004 Glycine max miR862a
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>hsa-miR-4738-5p MIMAT0019866 Homo sapiens miR-4738-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggt 7
||||||
Sbjct: 6 gctggt 1
>hsa-miR-4731-5p MIMAT0019853 Homo sapiens miR-4731-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>pma-miR-4563 MIMAT0019595 Petromyzon marinus miR-4563
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>pma-miR-4558 MIMAT0019590 Petromyzon marinus miR-4558
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>tca-miR-316-3p MIMAT0018717 Tribolium castaneum miR-316-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 6 tgctgg 1
>hsa-miR-3692-5p MIMAT0018121 Homo sapiens miR-3692-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 3 tgctgg 8
>hsa-miR-3663-5p MIMAT0018084 Homo sapiens miR-3663-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>vvi-miR3625-5p MIMAT0018013 Vitis vinifera miR3625-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 8 tgctgg 3
>hsa-miR-4299 MIMAT0016851 Homo sapiens miR-4299
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>rno-miR-133c MIMAT0017872 Rattus norvegicus miR-133c
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>rno-miR-3575 MIMAT0017861 Rattus norvegicus miR-3575
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 3 tgctgg 8
>ppy-miR-1287 MIMAT0016210 Pongo pygmaeus miR-1287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>ppy-miR-1226 MIMAT0016162 Pongo pygmaeus miR-1226
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggt 7
||||||
Sbjct: 8 gctggt 3
>hvt-miR-H5-5p MIMAT0012716 Herpesvirus of miR-H5-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>bmo-miR-2723 MIMAT0012599 Bombyx mori miR-2723
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 6 tgctgg 1
>cte-miR-2688-5p MIMAT0013540 Capitella teleta miR-2688-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>bta-miR-2400 MIMAT0011956 Bos taurus miR-2400
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 6 tgctgg 1
>mcv-miR-M1-3p MIMAT0010151 Merkel cell miR-M1-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 3 tgctgg 8
>hsa-miR-548q MIMAT0011163 Homo sapiens miR-548q
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>bta-miR-1287 MIMAT0009971 Bos taurus miR-1287
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>lgi-miR-133-5p MIMAT0009579 Lottia gigantea miR-133-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 2 gctggt 7
>tca-miR-133-5p MIMAT0019116 Tribolium castaneum miR-133-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 2 gctggt 7
>cfa-miR-1838 MIMAT0006644 Canis familiaris miR-1838
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggt 7
||||||
Sbjct: 8 gctggt 3
>mml-miR-29b-2-5p MIMAT0031079 Macaca mulatta miR-29b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 2 gctggt 7
>mml-miR-29b-1-5p MIMAT0026803 Macaca mulatta miR-29b-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 2 gctggt 7
>gga-miR-1701 MIMAT0007593 Gallus gallus miR-1701
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 2 gctggt 7
>gga-miR-1656 MIMAT0007535 Gallus gallus miR-1656
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggt 7
||||||
Sbjct: 8 gctggt 3
>cin-miR-92a-5p MIMAT0015253 Ciona intestinalis miR-92a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 3 gctggt 8
>oan-miR-1419b-5p MIMAT0007240 Ornithorhynchus anatinus
miR-1419b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 3 tgctgg 8
>oan-miR-133b-5p MIMAT0006996 Ornithorhynchus anatinus
miR-133b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>hsa-miR-1287-5p MIMAT0005878 Homo sapiens miR-1287-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>mml-miR-1226 MIMAT0005579 Macaca mulatta miR-1226
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggt 7
||||||
Sbjct: 8 gctggt 3
>ptr-miR-1226 MIMAT0005578 Pan troglodytes miR-1226
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggt 7
||||||
Sbjct: 8 gctggt 3
>hsa-miR-1226-3p MIMAT0005577 Homo sapiens miR-1226-3p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 2 gctggt 7
||||||
Sbjct: 8 gctggt 3
>smo-miR1107 MIMAT0005264 Selaginella moellendorffii miR1107
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 3 tgctgg 8
>ath-miR832-5p MIMAT0004250 Arabidopsis thaliana miR832-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 1 tgctgg 6
||||||
Sbjct: 1 tgctgg 6
>mdo-miR-29b-1-5p MIMAT0026703 Monodelphis domestica
miR-29b-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>rno-miR-133b-5p MIMAT0017205 Rattus norvegicus miR-133b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>kshv-miR-K12-6-5p MIMAT0002188 Kaposi sarcoma-associated
miR-K12-6-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Minus
Query: 1 tgctgg 6
||||||
Sbjct: 6 tgctgg 1
>dre-miR-133c-5p MIMAT0031971 Danio rerio miR-133c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>dre-miR-133b-5p MIMAT0003405 Danio rerio miR-133b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>gga-miR-29b-2-5p MIMAT0031072 Gallus gallus miR-29b-2-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 2 gctggt 7
>gga-miR-133c-5p MIMAT0026537 Gallus gallus miR-133c-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>gga-miR-29b-1-5p MIMAT0026488 Gallus gallus miR-29b-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 2 gctggt 7
>mmu-miR-133b-5p MIMAT0017083 Mus musculus miR-133b-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>dme-miR-133-5p MIMAT0020806 Drosophila melanogaster miR-133-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 2 gctggt 7
>mmu-miR-133a-5p MIMAT0003473 Mus musculus miR-133a-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>mmu-miR-29b-1-5p MIMAT0004523 Mus musculus miR-29b-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
>hsa-miR-29b-1-5p MIMAT0004514 Homo sapiens miR-29b-1-5p
Length = 8
Score = 12.4 bits (6), Expect = 80
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2 gctggt 7
||||||
Sbjct: 1 gctggt 6
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 223
Number of extensions: 214
Number of successful extensions: 113
Number of sequences better than 100.0: 113
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 113
Length of query: 7
Length of database: 286,624
Length adjustment: 4
Effective length of query: 3
Effective length of database: 143,312
Effective search space: 429936
Effective search space used: 429936
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 6 (12.4 bits)
