BLASTN 2.2.15 [Oct-15-2006]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= hbv-miR-b20-3p
(8 letters)
Database: /home/users/abid/BLAST/MIRBASE
35,828 sequences; 286,624 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634 16 6.9
hsa-miR-634 MIMAT0003304 Homo sapiens miR-634 16 6.9
cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p 16 6.9
str-miR-7880q-5p MIMAT0033378 Strongyloides ratti miR-7880q-5p 14 27
ppc-miR-133-5p MIMAT0032914 Pristionchus pacificus miR-133-5p 14 27
mdo-miR-29b-2-5p MIMAT0031047 Monodelphis domestica miR-29b-2-5p 14 27
mml-miR-6131 MIMAT0024624 Macaca mulatta miR-6131 14 27
cgr-miR-29b-5p MIMAT0023885 Cricetulus griseus miR-29b-5p 14 27
tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p 14 27
tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958 14 27
hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p 14 27
osa-miR2092-3p MIMAT0010049 Oryza sativa miR2092-3p 14 27
lgi-miR-133-5p MIMAT0009579 Lottia gigantea miR-133-5p 14 27
tca-miR-133-5p MIMAT0019116 Tribolium castaneum miR-133-5p 14 27
mml-miR-29b-2-5p MIMAT0031079 Macaca mulatta miR-29b-2-5p 14 27
mml-miR-29b-1-5p MIMAT0026803 Macaca mulatta miR-29b-1-5p 14 27
gga-miR-1701 MIMAT0007593 Gallus gallus miR-1701 14 27
gga-miR-1654 MIMAT0007533 Gallus gallus miR-1654 14 27
cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1 14 27
mdo-miR-29b-1-5p MIMAT0026703 Monodelphis domestica miR-29b-1-5p 14 27
gga-miR-29b-2-5p MIMAT0031072 Gallus gallus miR-29b-2-5p 14 27
gga-miR-29b-1-5p MIMAT0026488 Gallus gallus miR-29b-1-5p 14 27
dme-miR-133-5p MIMAT0020806 Drosophila melanogaster miR-133-5p 14 27
mmu-miR-29b-1-5p MIMAT0004523 Mus musculus miR-29b-1-5p 14 27
hsa-miR-29b-1-5p MIMAT0004514 Homo sapiens miR-29b-1-5p 14 27
>ptr-miR-634 MIMAT0008291 Pan troglodytes miR-634
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tgctggtt 8
||||||||
Sbjct: 8 tgctggtt 1
>hsa-miR-634 MIMAT0003304 Homo sapiens miR-634
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Minus
Query: 1 tgctggtt 8
||||||||
Sbjct: 8 tgctggtt 1
>cel-miR-35-5p MIMAT0020303 Caenorhabditis elegans miR-35-5p
Length = 8
Score = 16.4 bits (8), Expect = 6.9
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 1 tgctggtt 8
||||||||
Sbjct: 1 tgctggtt 8
>str-miR-7880q-5p MIMAT0033378 Strongyloides ratti miR-7880q-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 2 gctggtt 8
>ppc-miR-133-5p MIMAT0032914 Pristionchus pacificus miR-133-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 1 gctggtt 7
>mdo-miR-29b-2-5p MIMAT0031047 Monodelphis domestica
miR-29b-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 1 gctggtt 7
>mml-miR-6131 MIMAT0024624 Macaca mulatta miR-6131
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 2 gctggtt 8
>cgr-miR-29b-5p MIMAT0023885 Cricetulus griseus miR-29b-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 1 gctggtt 7
>tca-miR-3868-5p MIMAT0018828 Tribolium castaneum miR-3868-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgctggt 7
|||||||
Sbjct: 7 tgctggt 1
>tgu-miR-2958 MIMAT0014456 Taeniopygia guttata miR-2958
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctggt 7
|||||||
Sbjct: 1 tgctggt 7
>hbv-miR-B20-3p MIMAT0031158 Herpes B miR-B20-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctggt 7
|||||||
Sbjct: 2 tgctggt 8
>osa-miR2092-3p MIMAT0010049 Oryza sativa miR2092-3p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Minus
Query: 1 tgctggt 7
|||||||
Sbjct: 7 tgctggt 1
>lgi-miR-133-5p MIMAT0009579 Lottia gigantea miR-133-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 2 gctggtt 8
>tca-miR-133-5p MIMAT0019116 Tribolium castaneum miR-133-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 2 gctggtt 8
>mml-miR-29b-2-5p MIMAT0031079 Macaca mulatta miR-29b-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 2 gctggtt 8
>mml-miR-29b-1-5p MIMAT0026803 Macaca mulatta miR-29b-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 2 gctggtt 8
>gga-miR-1701 MIMAT0007593 Gallus gallus miR-1701
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 2 gctggtt 8
>gga-miR-1654 MIMAT0007533 Gallus gallus miR-1654
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctggt 7
|||||||
Sbjct: 2 tgctggt 8
>cre-miR909.1 MIMAT0004967 Chlamydomonas reinhardtii miR909.1
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 1 tgctggt 7
|||||||
Sbjct: 1 tgctggt 7
>mdo-miR-29b-1-5p MIMAT0026703 Monodelphis domestica
miR-29b-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 1 gctggtt 7
>gga-miR-29b-2-5p MIMAT0031072 Gallus gallus miR-29b-2-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 2 gctggtt 8
>gga-miR-29b-1-5p MIMAT0026488 Gallus gallus miR-29b-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 2 gctggtt 8
>dme-miR-133-5p MIMAT0020806 Drosophila melanogaster miR-133-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 2 gctggtt 8
>mmu-miR-29b-1-5p MIMAT0004523 Mus musculus miR-29b-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 1 gctggtt 7
>hsa-miR-29b-1-5p MIMAT0004514 Homo sapiens miR-29b-1-5p
Length = 8
Score = 14.4 bits (7), Expect = 27
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2 gctggtt 8
|||||||
Sbjct: 1 gctggtt 7
Database: /home/users/abid/BLAST/MIRBASE
Posted date: Sep 2, 2014 3:58 PM
Number of letters in database: 286,624
Number of sequences in database: 35,828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 35828
Number of Hits to DB: 286
Number of extensions: 258
Number of successful extensions: 147
Number of sequences better than 100.0: 25
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 25
Length of query: 8
Length of database: 286,624
Length adjustment: 4
Effective length of query: 4
Effective length of database: 143,312
Effective search space: 573248
Effective search space used: 573248
X1: 5 ( 9.9 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 5 (10.4 bits)
S2: 7 (14.4 bits)
